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  • Principal Scientist, Protein Engineering

    Califesciences

    Senior principal scientist job in San Diego, CA

    Our company is a global health care leader with a diversified portfolio of prescription medicines, vaccines, and animal health products. Our teams combine leading drug discovery capabilities and world‑class R&D to turn breakthrough science into life‑changing medicines. Our Research and Development Division in San Diego is a cross‑functional team (Discovery Biologics, Immunology, and Data Science) focused on discovering and developing novel, innovative therapeutics in the field of Inflammation and Immunology. The Discovery Biologics Department is seeking an exceptional and experienced scientist to drive biologics discovery and development. The successful candidate will lead projects from discovery to the start of IND‑enabling studies, with a focus on antibodies, bispecific molecules, and evaluation of novel biologic platforms and mechanisms of action. Key Responsibilities Lead the design, engineering, and characterization of innovative biologics, including antibodies and bispecific molecules. Direct the Protein Sciences team in the production and purification of antibodies in mammalian cell lines (transient HEK, CHO) and antigen/protein reagents required for the drug discovery portfolio. Drive innovation by contributing to exploratory programs and technology development. Provide strategic project leadership and partner cross‑functionally with teams in discovery, pharmacokinetics, pharmacodynamics, toxicology, CMC, translational sciences, and translational medicine. Lead and mentor a team of scientists. Foster a high‑performance culture of collaboration, engagement, self‑accountability, and inclusion. Partner across multidisciplinary interfaces to achieve organizational objectives. Stay abreast of external advancements in the relevant scientific fields. Promote the external reputation of the Discovery Biologics Department through publications and conference presentations. Education Bachelor's (≈14 years experience), Master's (≈10 years experience), or Ph.D. (≈7 years experience) in Immunology, Molecular Biology, Biochemistry, Cellular Biology, or a related field, with relevant experience. Required Experience and Skillsh3> Deep scientific knowledge across workflows and domains integral to the discovery and development of protein therapeutics. Expertise in therapeutic protein design, engineering, and characterization. Experience advancing a biotherapeutic program from discovery into development and applying scientific or platform innovations. Demonstrated passion for talent development and a proven track record. Champion for a diverse and inclusive culture. Excellent verbal and written communication skills. Strong external reputation through publications, presentations, and scientific community engagement. Preferred Experience and Skills Experience with protein therapeutics beyond traditional mAbs, including alternative non‑Ig scaffolds, bi‑ or multispecifics, and fusion proteins. Fluency in techniques for analyzing protein-protein interactions. Knowledge of computational approaches for protein engineering. Experience in outsourcing and managing external collaborations. Salary and Benefits Salary Range: $156,900.00 - $247,000.00. The successful candidate will be eligible for annual bonus and long‑term incentive, if applicable. We offer a comprehensive benefits package, including medical, dental, vision, 401(k), paid holidays, vacation, and compassionate and sick days. More information about benefits is available at ******************************************************* Application You can apply for this role through **************************** or via the Workday Jobs Hub if you are a current employee. The application deadline for this position is indicated on the posting. Current employees and contingent workers are encouraged to apply. Legal and Equal Opportunity Information As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability status, or other applicable legally protected characteristics. We comply with all affirmative action requirements for protected veterans and individuals with disabilities. For more information about personal rights under U.S. Equal Opportunity Employment laws, visit EEOC websites. We are proud to be a company that embraces the value of bringing together talented and committed people with diverse experiences, perspectives, skills, and backgrounds. The fastest way to breakthrough innovation is when people with diverse ideas, broad experiences, backgrounds, and skills come together in an inclusive environment. We encourage our colleagues to respectfully challenge one another's thinking and approach problems collectively. #J-18808-Ljbffr
    $156.9k-247k yearly 1d ago
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  • Principal AI Scientist

    Intuit Inc. 4.8company rating

    Senior principal scientist job in San Diego, CA

    Come join our collaborative and creative group of AI scientists and machine learning engineers and build models that directly affect hundreds of thousands of our customers. In this role you will be building and deploying machine learning models using both analytical algorithms and deep learning approaches. We are waiting for you to join us and do the best work of your life. Responsibilities Practices excellent leadership and communication skills to influence and lead teams and to evangelize AI science across the organization Leads team's work in one or more of: ML, NLP, Statistics, or Optimization, performs hand-on work in these domains. Weighs ROI considerations of general and tailored capabilities for projects in the team Creates new capabilities that solve critical business problems Pushes the boundaries of ML by developing foundational methods and novel applications from state-of-the-art ML technologies and industry trends Influences business leaders to shape mission critical projects Creates multi-year vision that connects product strategy with technology strategy Drives architecture decisions, influences and contributes to ML platform architecture and strategy Leads team and partners to the successful delivery and integration of ML solutions Conducts design reviews, holds teams to technical and operational rigor Acts as an advisor in overseeing and mentoring the work of colleagues towards the building of a vibrant practice community Pay offered is based on factors such as job-related knowledge, skills, experience, and work location. To drive ongoing pay equity for employees, Intuit conducts regular comparisons across categories of ethnicity and gender. Qualifications PhD/MS in Engineering Mathematics, Statistics, Theoretical/Computational Physics, or related field Solid knowledge of statistical techniques 3+ years as either a lead in a AI science role or in a management position in AI science Strong communication skills and proven experience as an influencer at the executive level Hands-on programming experience and expert knowledge in one or more of: ML, NLP, Statistics, or Optimization 6+ years' experience manipulating large datasets and using databases (e.g. R, SQL, S-Plus, etc.) 6+ years' experience with a general-purpose programming language (e.g. Python, Scala, etc.) Expert knowledge and hands-on experience with ML pipelines, processes, and design patterns Proven track record of influencing business leaders to shape mission critical projects Proven track record of leading team to successful delivery of ML solutions Strong interpersonal and communication skills in order to effectively contribute to technical teams and make presentations to a variety of technical and business personnel Intuit provides a competitive compensation package with a strong pay for performance rewards approach. This position will be eligible for a cash bonus, equity rewards and benefits, in accordance with our applicable plans and programs (see more about our compensation and benefits at Intuit : Careers | Benefits). Pay offered is based on factors such as job-related knowledge, skills, experience, and work location. To drive ongoing fair pay for employees, Intuit conducts regular comparisons across categories of ethnicity and gender. The expected base pay range for this position is: Southern California, CA: $237,000 - $320,500 #J-18808-Ljbffr
    $237k-320.5k yearly 4d ago
  • Principal Research Scientist I, Discovery Biotherapeutics

    The Antibody Society

    Senior principal scientist job in San Diego, CA

    AbbVie's mission is to discover and deliver innovative medicines and solutions that solve serious health issues today and address the medical challenges of tomorrow. We strive to have a remarkable impact on people's lives across several key therapeutic areas immunology, oncology, neuroscience, and eye care and products and services in our Allergan Aesthetics portfolio. For more information about AbbVie, please visit us at*************** Follow @abbvie onX,Facebook,Instagram,YouTube,LinkedInandTik Tok. Job Description Discovery Biotherapeutics and Genetic Medicine (BGM) at AbbVie is seeking a highly motivated Principal Scientist to join the Biotherapeutics group at the AbbVie Bay Area (ABA) site based in South San Francisco, CA. This role seeks a skilled and experienced individual to contribute to and lead therapeutic programs, focusing on biophysical screening to advance biotherapeutics from early exploration through lead identification and optimization. Close partnerships with Oncology will be required to drive transformative ideas to the clinic. The ideal candidate must possess expertise in high-throughput biologics screening and characterization methods (e.g. ELISA, FACS, BLI, SPR, etc.) and have a solid foundation in protein sciences and antibody discovery with a proven ability to work effectively on cross-functional teams. Responsibilities Lead from the lab to advance large molecule biologics projects from exploratory to optimization stages and drive Go / No Go decisions. Effectively partner with functional and therapeutic areas to achieve project objectives. Identify and integrate cutting-edge technologies and methodologies into screening and assay development, anticipating future trends in drug discovery. Multitask and work within timelines while maintaining a high level of productivity. Supervise 1-2 scientists, evaluate team performance, and is accountable for the effective performance of team. Qualifications BS, MS, or PhD with typically 14+ (BS), 12+ (MS), or 6+ (PhD) years of relevant experience. Experience with biologics, monoclonal antibodies and/or protein therapeutics. Experience advancing Discovery programs from exploratory to candidate nomination. Independently develop and execute biosensor and cell-based platforms to evaluate panels of antibody biotherapeutics. Implement high-throughput epitope binning for large panels of monoclonal antibodies and develop deep knowledge of antibody sequence/function relationships. Evaluate and integrate biomolecular interaction technologies (e.g., SPR) to guide therapeutic candidate selection recommendations. Expert in biophysical characterization instrumentation and methodologies such as SEC, MS, HDX-MS, X-ray crystallography, DSF, DLS, etc. Challenge the status quo and onboard cutting-edge technologies to drive discovery and innovation. Excellent attention to detail, record keeping, and organization. Excellent communication, presentation, and collaboration skills. Preferred Qualifications Antibody sequence and structure knowledge. Structure-based molecular modeling and applications with AI/ML and integrating complex datasets to drive data-based decisions. CRO and external partner management. Additional Information Applicable only to applicants applying to a position in any location with pay disclosure requirements under state or local law: The compensation range described below is the range of possible base pay compensation that the Company believes in good faith it will pay for this role at the time of this posting based on the job grade for this position. Individual compensation paid within this range will depend on many factors including geographic location, and we may ultimately pay more or less than the posted range. This range may be modified in the future. We offer a comprehensive package of benefits including paid time off (vacation, holidays, sick), medical/dental/vision insurance and 401(k) to eligible employees. This job is eligible to participate in our short-term incentive programs. This job is eligible to participate in our long-term incentive programs. Note: No amount of pay is considered to be wages or compensation until such amount is earned, vested, and determinable. The amount and availability of any bonus, commission, incentive, benefits, or any other form of compensation and benefits that are allocable to a particular employee remains in the Company's sole and absolute discretion unless and until paid and may be modified at the Company's sole and absolute discretion, consistent with applicable law. AbbVie is an equal opportunity employer and is committed to operating with integrity, driving innovation, transforming lives and serving our community. Equal Opportunity Employer/Veterans/Disabled. US & Puerto Rico only - to learn more, visit ************************************************************************* US & Puerto Rico applicants seeking a reasonable accommodation, click here to learn more: ************************************************************* #J-18808-Ljbffr
    $124k-193k yearly est. 18h ago
  • Principal CADD Scientist

    Genesis Therapeutics

    Senior principal scientist job in San Diego, CA

    Genesis Molecular AI is assembling a world-class computational chemistry team to revolutionize drug discovery through cutting-edge machine learning and biophysical simulation. We are seeking a Principal CADD Scientist to join our team, working directly with scientists in our state-of-the-art wet lab and with our distributed computational chemistry and CADD science teams across the US. What You Will Do (Key Responsibilities) Utilize a combination of industry-standard and proprietary AI-powered CADD tools to guide small molecule drug discovery programs across a diverse target portfolio, including novel targets with limited chemical precedents. Use approaches like virtual screening, molecular simulation, and potency and ADMET prediction to support key decision-making in drug discovery efforts. Collaborate closely with medicinal chemists in molecular design and the development of project-specific computational approaches. Act as a cross-team connector, effectively communicating between our computational chemistry and medicinal chemistry teams to ensure seamless information flow and collaborative decision making. Adapt to a fast-paced environment where innovation and quick iteration are encouraged. What you'll bring PhD in Computational Chemistry, Structural Biology, or a related field. This particular role may also be suitable for PhD-level scientists with degrees in organic or medicinal chemistry with extensive experience in the lab, who have transitioned into industry roles in CADD. Deep understanding of structure-based drug design and protein-ligand interactions. Proficiency with industry-standard CADD tools such as MOE, PyMOL, and Schrodinger Suite. Minimum of 5+ years of industry experience as a CADD scientist in pharma or biotech, with hands-on experience in active drug discovery programs. Onsite in our San Diego lab is preferred for this role, to be able to collaborate with our scientists. We are open to remote team members too. What we offer Competitive Pay Health Care Plans (including Medical, Dental, and Vision, fully covered for the employees) Stock Option Eligibility 401(k) Plan Open PTO Policy Paid Company Holidays Subsidized lunch and snacks at our offices Genesis Molecular AI is pioneering foundation models for molecular AI to unlock a new era of drug design and development. The company's generative and predictive AI platform, GEMS (Genesis Exploration of Molecular Space), integrates AI and physics into industry-leading models to generate and optimize drug molecules, including the breakthrough generative diffusion model Pearl for structure prediction. Genesis has raised over $300 million from leading AI, tech and life science-focused investors, signed multiple AI-focused research collaborations with major pharma partners, and is deploying GEMS to advance an internal therapeutics pipeline for a variety of high-impact targets. Genesis is headquartered in Burlingame, CA, with a fully integrated laboratory in San Diego. We are proud to be an inclusive workplace and an Equal Opportunity Employer. #J-18808-Ljbffr
    $112k-173k yearly est. 2d ago
  • Lead In Vitro Pharmacology Scientist - GPCR Drug Discovery

    Crinetics Pharmaceuticals, Inc. 3.9company rating

    Senior principal scientist job in San Diego, CA

    A biopharmaceutical company in San Diego seeks a Principal Scientist to lead an in vitro pharmacology team. Candidates should have a Ph.D. and over 8 years in drug discovery, particularly with GPCRs. Responsibilities include designing assays, managing a team, and collaborating on research projects. The competitive salary ranges from $158,000 to $197,000, with comprehensive benefits including health insurance and PTO. #J-18808-Ljbffr
    $158k-197k yearly 4d ago
  • Lead Scientist, In Vitro Antibody Display & Discovery

    Eli Lilly and Company 4.6company rating

    Senior principal scientist job in San Diego, CA

    A leading global healthcare firm in San Diego is seeking a highly motivated scientist to contribute to biotherapeutics development. The successful candidate will discover and engineer antibodies, oversee experiments, and utilize various molecular biology techniques. Applicants should have at least 6 years of relevant experience and a strong background in flow cytometry. This position offers competitive compensation ranging from $110,250 to $187,000 along with comprehensive benefits. #J-18808-Ljbffr
    $110.3k-187k yearly 3d ago
  • Senior Principal Scientist, Translational PK/PD Modeling

    Neurocrine Biosciences 4.7company rating

    Senior principal scientist job in San Diego, CA

    A biotechnology company in San Diego is seeking a Senior Principal Scientist specializing in DMPK Translational PKPD Modeling. The role involves developing mechanistic PK/PD models, leading drug discovery project teams, and collaborating with diverse research disciplines. Candidates must hold a PhD in Biochemistry or related field and possess substantial industry experience in pharmacokinetics. The position offers a competitive salary range of $156,900 to $214,000 with additional benefits including bonuses, retirement plans, and comprehensive health coverage. #J-18808-Ljbffr
    $156.9k-214k yearly 4d ago
  • Analytical Scientist

    Hydrogen Group

    Senior principal scientist job in San Diego, CA

    Schedule: Monday-Friday, 8:00 AM - 5:00 PM Duration: 6-Month Contract (coverage for leave) Pay: 40-44 USD per hour We are seeking a skilled Scientist with a strong background in biochemical, biophysical, and analytical sciences to join a Method Development & Transfer team. In this role, you will design, develop, and transfer analytical assays used to characterize critical components supporting reagent development and manufacturing. This position is highly collaborative and plays a key role in ensuring analytical methods are robust, validated, and ready for use in regulated manufacturing environments. Key Responsibilities Develop and optimize analytical methods for oligonucleotides, enzymes, and liquid reagent consumables Apply analytical techniques such as HPLC, UV-Vis, and fluorescence spectroscopy (LC-MS strongly preferred) Support method development, qualification, validation, and transfer into manufacturing and QC environments Partner cross-functionally with Development, Quality Control, and Manufacturing teams Design and support QC assays to enable new product readiness Prepare technical documentation to support regulated manufacturing processes Select, qualify, maintain, and troubleshoot analytical instruments and software Define process requirements including instrumentation, documentation, and training needs Plan and execute laboratory experiments with a high level of scientific rigor Analyze data, troubleshoot issues, and provide technical recommendations May provide guidance or oversight to junior staff or research associates Required Qualifications BS or MS in Chemistry, Biochemistry, Biology, or related scientific discipline 3-5 years of industry experience in analytical or biochemical method development Hands-on experience with HPLC (required) Experience with UV-Vis and fluorescence spectroscopy Strong background in analytical characterization of enzymes and/or oligonucleotides Ability to manage multiple priorities in a fast-paced environment Strong written and verbal communication skills Preferred Qualifications Experience with LC-MS or other advanced analytical techniques Exposure to method validation and transfer into Manufacturing or QC Experience working in regulated or GMP environments Familiarity with next-generation sequencing platforms Experience working with laboratory databases or LIMS systems ...
    $89k-129k yearly est. 1d ago
  • Lead Biologics Scientist: Protein Engineering & Antibody Design

    MSD Malaysia

    Senior principal scientist job in San Diego, CA

    A global healthcare company based in San Diego is looking for an experienced scientist to lead biologics discovery and development. This role involves working cross-functionally with Immunology teams and external partners to innovate therapeutics focusing on antibodies and multicentric projects. Candidates should possess a strong background in protein therapeutics with respective educational qualifications and experience. A commitment to diversity and inclusion within the workplace is essential. #J-18808-Ljbffr
    $69k-114k yearly est. 2d ago
  • Associate Principal / Principal Scientist, Computational Chemistry

    Neomorph

    Senior principal scientist job in San Diego, CA

    Neomorph is seeking a highly experienced and strategically minded Associate Principal Scientist or Principal Scientist in Computational Chemistry to join our dynamic and collaborative discovery team. This is a hands-on, individual contributor role - you will lead cutting-edge computational chemistry efforts, roll up your sleeves to generate design hypotheses and deliver actionable insights, while influencing program strategy and scientific direction. Whether you join as an Associate Principal or Principal level depends on your years of experience and track record. In either case, you will play a key role in advancing our discovery pipeline from target assessment through candidate nomination, partnering with medicinal chemistry, structural biology, biophysics, and biology teams. Key Responsibilities Serve as the primary computational chemistry contributor on one or more drug discovery programs - designing, executing and interpreting computational workflows to support hit identification, hit-to-lead, and lead optimization. Integrate structure- and ligand-based design, cheminformatics, predictive modeling and molecular simulation to propose novel compounds and drive progression of small-molecule therapeutics (including molecular glues/degraders). Translate SAR, structural and modeling data into innovative design hypotheses; prioritize compounds and support decision-making alongside drug discovery teams. Collaborate cross-functionally with medicinal chemistry, structural biology, biophysics, and biology to impact program strategy, compound design and project milestones. Develop, optimize and deploy computational tools, workflows and methods (e.g., docking, MD, free energy calculations, ML/AI-driven design) to enhance our internal capabilities and accelerate discovery. Present scientific results and strategic recommendations to internal project teams and senior leadership; provide mentorship and scientific guidance to less-experienced colleagues (without direct line-management responsibility). Stay abreast of emerging computational chemistry technologies, apply deep domain knowledge and help shape the future of our computational capability. Required Qualifications Associate Principal Scientist level: PhD in Computational Chemistry, Theoretical Chemistry, or a related field with 6+ years, MS with 9+ years, or BS with 12+ years of relevant industry experience in drug discovery. Principal Scientist level: Ph.D. in Computational Chemistry, Theoretical Chemistry, Chemistry or related field with 8+ years, M.S. with 11+ years or B.S. with 14+ years of relevant industry experience. For both levels: Demonstrated hands-on experience in small-molecule drug discovery, with proven ability to apply molecular modeling, docking, free energy calculations, QSAR/ML, and cheminformatics to support compound design and progression. Strong record of working independently and delivering high-quality scientific work, while also collaborating effectively in cross-functional teams. Proficiency with commercial and/or open source computational chemistry and molecular modeling software (e.g., Schrödinger, OpenEye, AMBER, GROMACS, etc.), and fluency in scripting/programming (e.g., Python, R). Excellent communication and collaboration skills, with ability to influence project teams and senior leadership through scientific insight. Self-starter attitude, willing to roll up sleeves and execute hands-on work while contributing strategically. Please note: This role is not a people-manager/line-management position - it is a senior individual contributor role, intended for a strong computational scientist who thrives doing the work directly and influencing through scientific leadership rather than managerial oversight. Base salary range for Associate Principal Scientist is $167,000 ‒ $198,000 Base salary range for the Principal Scientist is: $187,000 - $240,000 Why Neomorph? At Neomorph, we believe scientific excellence thrives in an environment rooted in transparency, integrity, inclusivity, passion and flexibility. You'll join a growing team at the forefront of targeted protein degradation, where your contributions as an individual contributor will have significant impact on the company's discovery trajectory. What we offer: Industry competitive compensation Annual target bonus Stock options 401K plan Career advancement opportunities Monthly town halls to share business and scientific updates Work Hard, Stay Well Comprehensive medical, dental, and vision plans for employees and their dependents Health and Dependent Care FSA and HSA Plan with monthly Neomorph contribution Employee Assistance Program 10 holidays + Winter Shutdown + 3 weeks of vacation time with additional accruals after 2nd year of employment, separate sick leave. Supplemental pay for Pregnancy Disability Leave Paid Parental Leave for employees with a newborn child or a child placed with them for adoption or foster care Lifestyle Casual work environment Volunteer days off each year to spend time contributing to causes you care about Flexible work schedule Access to onsite gym Onsite space to store your bicycle (or surfboard) Have Fun! We believe in work/life balance and Fun is at the core of our Core Values. In addition to department and company happy hours, we have regular company-wide and department lunches and social events (ie Padres games, summer picnic, holiday party, bring your kids to work day). About Us: Neomorph is a venture backed biotechnology company solving critical problems in human health through the discovery and development of innovative new medicines against ‘undruggable targets'. Our team is comprised of industry leading experts in protein degradation and molecular glues who have a track record of ground-breaking discoveries in the field. We are committed to leadership in advancing the science and technology of molecular glue drug discovery, while prosecuting a pipeline of projects through clinical development. Our patient-first, science-driven approach is complemented by our dedication to a supportive and collaborative work environment. Neomorph is headquartered in San Diego, California. Neomorph is committed to pursuing and hiring a diverse workforce and is proud to be an equal opportunity employer. All qualified applicants will receive consideration for employment and will not be discriminated against on the basis of any characteristic protected by applicable federal, state or local law. Notice to agencies: Neomorph will not accept unsolicited assistance from recruiting/search agencies for this employment opportunity. Please, no phone calls or emails. All resumes submitted by recruiting or search agencies to any employee at Neomorph via email, the Internet or in any form and/or method without a valid written search/recruitment agreement in place for this position will be deemed the sole property of Neomorph. No fee will be paid in the event the candidate is hired by Neomorph as a result of the referral or through other means.
    $187k-240k yearly 60d+ ago
  • Senior Bioinformatics Scientist

    Invivoscribe 4.2company rating

    Senior principal scientist job in San Diego, CA

    Invivoscribe is an industry pioneer, dedicated to Improving Lives with Precision Diagnostics . Invivoscribe has been the global leader in driving international standardization of testing and accelerating patient access to the newest and best cancer treatments for over 30 years. Headquartered in sunny San Diego, California with locations across the world, we offer a comprehensive portfolio of products and services. We work with key collaborators to develop molecular assays, reagents, controls and bioinformatics tools under ISO 13485 design control that are used by over 700 clinical laboratories in over 160 countries. Our global network of laboratories offers internationally standardized next generation molecular and flow cytometry panels to support drug development and accelerate drug approvals worldwide. We work with pharmaceutical partners and international regulatory agencies across the globe to develop companion diagnostics, which are necessary to gain approval of new drugs and treatments for cancer patients. Our harmonized ISO15189 accredited and CLIA/CAP clinical laboratories offer a test menu focused on biomarkers which are clinically actionable to support therapeutic decisions, measurable residual disease (MRD) testing, patient stratification, and trial enrollment, all designed to accelerate approvals of new oncology drugs and treatments. For 30 years, we have been at forefront of precision diagnostics, and we're just getting started! We are looking to add a Senior Bioinformatics Scientist. The Senior Bioinformatics Scientist is a hands-on technical leader with advanced knowledge of scientific principles and concepts who designs, builds, and validates production-grade bioinformatics software and scalable NGS pipelines (on-prem and cloud) to diagnose and track disease (MRD) for clinical and research applications. This role independently identifies opportunities, defines technical roadmaps, and leads delivery from requirements and design through implementation, verification/validation, release, and lifecycle support. Core Responsibilities Include: Lead the design and development of bioinformatics software and pipelines to support Whole Genome Sequencing (WGS), hybrid-capture, and amplicon based NGS assays. Work in close collaboration with the R&D and clinical lab teams, representing bioinformatics from a technical leadership role. Evaluate and develop novel methods and external tools; perform benchmarking and method comparisons, and document recommendations and decisions; own projects end-to-end. Develop reproducible, testable bioinformatics software using modern engineering practices (git, code review, unit/integration tests, CI/CD, containerization), and workflow technologies (e.g., Nextflow). Apply deep Next Generation Sequencing (NGS) analytics expertise and partner with scientific stakeholders to translate bioinformatics outputs into actionable conclusions. Lead bioinformatics software development for CAP/CLIA/NYA environments, including requirements definition, design documentation, verification and validation planning/execution, traceability, change control, and release documentation. Provide technical leadership across cross-functional teams and influence others to raise team standards (R&D, clinical labs, QA/RA, DevOps). You Bring: Ph.D. degree in bioinformatics, computational biology, molecular biology, or related field with, typically, 8+ years applicable post-graduate experience. M.S. degree in bioinformatics or related field and 10+ years of applicable post-graduate experience. Equivalent combination of education and experience may be considered. Advanced proficiency with Linux and strong programming skills (Python, bash required; additional languages welcome). Experience building and/or leveraging AI agents and LLMs for various tasks and optimization of software development. Demonstrated experience designing and building production bioinformatics pipelines for WGS/WTS assays. Hands-on experience developing and operating bioinformatics software in the cloud, including workflow execution at scale and management of compute/storage costs. Experience collaborating across multi-disciplinary teams and providing technical leadership through influence (with or without direct reports). Strong foundation in statistics and quantitative analysis of biological datasets. Extensive background in immunology or cancer research is highly preferred. Experience developing software in a regulated environment is a plus (e.g. IVD, IVDR, CAP/CLIA/NYS). Proficient computer skills and good working knowledge of Microsoft Office programs and collaboration tools (Word, Outlook, Teams, Excel and PowerPoint) and the ability to learn new software programs. We Bring: A beautiful modern facility centrally located in San Diego County, with many jobs conducive to flexible scheduling and telework options. A welcoming breakroom for gathering with hosted hot/cold beverages and healthy convenience foods, and an available micro-market to get you through the day. A positive workplace culture with an emphasis on support, respect and belonging. A diverse and inclusive work environment where you will learn, grow, and make new friends. Competitive pay, discretionary bonus program, incentive stock options, generous benefit options, 401k with a fully vested employer match, and generous time off benefits. Invivoscribe is an Equal Opportunity Employer.
    $86k-134k yearly est. Auto-Apply 18d ago
  • Scientist

    Artech Information System 4.8company rating

    Senior principal scientist job in San Diego, CA

    Artech is the 10th Largest IT Staffing Company in the US, according to Staffing Industry Analysts' 2012 annual report. Artech provides technical expertise to fill gaps in clients' immediate skill-sets availability, deliver emerging technology skill-sets, refresh existing skill base, allow for flexibility in project planning and execution phases, and provide budgeting/financial flexibility by offering contingent labor as a variable cost. Job Description • The candidate will be a key member of the Ion Channel/GPCR/Transporter Pharmacology group, and provide experimental support for programs from target nomination through declaration of a clinical candidate. S/he will assist with the characterization of Client membrane targets, MoA studies and the development of HTS assays. • A MS degree with a minimum of 3 - 5 years of experience or a BS degree with a minimum of 4 - 8 years of laboratory experience is required. Hands- on expertise with plate-based assays, molecular biology, biochemistry, binding assays and cell culture techniques is essential. Working knowledge of ion channel, transporter or GPCR pharmacology is preferred. This position will be located in La Jolla, CA and may require up to 10% travel. Additional Information Best Regards, Anuj Mehta ************** Morristown, NJ 07960
    $110k-163k yearly est. 60d+ ago
  • Scientist - II

    Pioneer Data

    Senior principal scientist job in San Diego, CA

    Design and conduct laboratory studies utilizing a variety of sample analysis platforms primarily on human specimens for biomarker and disease understanding applications in psoriasis programs Conduct ex vivo functional, target engagement functional assays with human and non-human PBMCs. Utilize flow cytometry/FACS, immunoassays, gene expression profiling, cell and tissue culture, nucleic acid extractions, and other platforms relevant to profiling of immune cells and skin biology Initiate or help manage projects with external vendors or collaborators Execute research activities under limited supervision Provide critical analysis and interpretation of data Deliver reporting and communication of results, and participate in scientific discussions Experience & Expertise A minimum of a Ph.D. degree or a Master's degree with 3 or more years of related experience is required. Experience with immunoassays, flow cytometry/FACS and tissue culture is required, and a background in inflammation or immunology research is strongly preferred. Experience with tissue culture and functional cellular immunology assays desired Experience with molecular biology including RNA, DNA preparation and analysis including RT QPCR, microarrays, RNAseq desired. Ability to work independently with minimal supervision in a team environment. Proficiency in working with complex data sets and interpreting and presenting results. Knowledge of data analysis and visualization applications. Effective oral, written and interpersonal communication skills. Technical Knowledge and Skills: Experience in tissue culture of immune cells including ex vivo assays with primary blood and tissue cells such as cell differentiation, activation, cytokine production. Experience in protein detection assays including ELISA, MSD, Singulex, etc. Experience with FACS immunophenotyping and sorting of human cells. Experience in psoriasis research would be an advantage, as would familiarity with analysis of samples from clinical studies and other aspects of translational research. Qualifications Education Qualification: Only MS or PhD candidates are needed. Additional Information
    $94k-148k yearly est. 2d ago
  • Scientist IX

    General Atomics and Affiliated Companies

    Senior principal scientist job in San Diego, CA

    General Atomics (GA), and its affiliated companies, is one of the world's leading resources for high-technology systems development ranging from the nuclear fuel cycle to remotely piloted aircraft, airborne sensors, and advanced electric, electronic, wireless and laser technologies. We have an exciting opportunity for a Program (IFE) Director to join our Inertial Fusion Technology team in San Diego, CA. The Inertial Fusion Energy (IFE) Director will report to the Vice President of Inertial Fusion Technology and is responsible for the planning, managing and technical performance of significant IFE related engineering and technology development program(s) in Energy Group's San Diego facilities. Specifically, the position is responsible for developing and driving strategic direction and execution of R&D process development for high volume manufacture, fueling, insertion, tracking/targeting pertaining to fusion target concepts for Inertial Fusion Energy reactor concepts and roadmaps in collaboration with Inertial Fusion Energy (IFE) companies. You will build up and lead a team, operate facilities, and collaborate with IFE companies to advance target fabrication research and development. The position will oversee all phases of program(s) from initiation through delivery. You will manage budgets, timelines, and milestones across internal and external developments. In the collaboration with IFE partner companies, you will influence target design concepts and specifications to realize the aforementioned objectives. The IFE program represent several distinct areas and/or components opportunities and is has become a significant factor in GA's Energy group strategic business outlook. DUTIES AND RESPONSIBILITIES: Direct all phases of the program(s) from conceptualization through completion, including acquisition, planning, and managing technical performance to ensure quality, business, and financial objectives are attained. Develop and coordinate new program plans or delivery methods with little precedence for coordination across distinctive products while serving multiple customers. Consult with executive management to develop and implement current, annual, and long-term technical, schedule, quality, business, and financial objectives for the program(s) and contribute to the development of Group/Company objectives which have a long-range forecast projected to continue for multiple years. Manage the establishment of design concepts, criteria, and engineering efforts for product research, development, testing, and integration. Interact with senior management concerning matters of significance to the company. Act as primary contact for program issues. Direct, influence, and coordinate the preparation of proposals, business plans, proposal work statements and specifications, operating budgets, and financial terms/conditions of contract(s). Influence contract acquisitions, negotiations and modifications. Ensure technical leadership and excellence is maintained by directing and participating in the planning, attraction, selection, retention, and development of the required management, professional, and technical talent. Act as the primary customer contact for program activities and lead program review sessions with customers to discuss cost, schedule, and technical performance. Identify program issues and provide leadership in developing solutions such as re-allocation of resources or modifying contract specifications. Lead the development of new business opportunities and expansion of existing business opportunities. Participating with Group management in pursuing business partnerships, alliances, and joint ventures that enhance the capabilities of the Group/Company and may result in new products, programs and business opportunities. Direct the development of and ensure the security of proprietary technology, and maintain the strict confidentiality of sensitive information. Other duties as assigned or required. Minimum Qualifications: Requires a Masters or PhD in engineering, science or a related technical field as well as fifteen or more years of progressively complex program experience. May substitute equivalent experience in lieu of education. Strong communication, leadership, presentation, and interpersonal skills are required to enable an effective interface with other departments, all levels of management, professional and support staff, customers, potential customers, and government representatives. Must be an internationally recognized expert in one or more scientific fields as demonstrated by; (1) original work(s) published in national or professional scientific journals; (2) invited presentations to national scientific symposiums; (3) participation on national scientific review panels or scientific committees; (4) recognition via scientific awards or distinction as fellow (or equivalent) by a major scientific organization; and (5) scientific patents held. Has demonstrated leadership ability by directing/developing the solution(s) to highly technical and complex scientific problems, and has experience in influencing, attracting, and retaining technical business opportunities as well as professional staff. Possesses the ability to; (1) guide the resolution of unusually complex technical problems; (2) develop solutions to complex problems that require the regular use of ingenuity and creativity ; (3) champion the development of new concepts and principles; and (4) serve as an expert spokesperson on those concepts and principles. Demonstrates excellent communication, computer, presentation, and interpersonal skills, be customer focused, and able to work on a self-initiated basis or in a team environment. Able to work extended hours and travel as required. We recognize and appreciate the value and contributions of individuals with diverse backgrounds and experiences and welcome all qualified individuals to apply. Typically requires a Bachelors degree, Masters degree or PhD in a scientific or related technical field and progressively complex scientific experience as follows; twenty or more years experience with a Bachelors degree, eighteen or more years experience with a Masters degree, and fifteen or more with a PhD. Equivalent comprehensive scientific experience may be substituted in lieu of education. Strong communication, leadership, presentation, and interpersonal skills are required to enable an effective interface with other departments, all levels of management, professional and support staff, customers, potential customers, and government representatives. Must be an internationally recognized expert in one or more scientific fields as demonstrated by; (1) original work(s) published in national or professional scientific journals; (2) invited presentations to national scientific symposiums; (3) participation on national scientific review panels or scientific committees; (4) recognition via scientific awards or distinction as fellow (or equivalent) by a major scientific organization; and (5) scientific patents held. Has demonstrated leadership ability by directing/developing the solution(s) to highly technical and complex scientific problems, and has experience in influencing, attracting, and retaining technical business opportunities as well as professional staff. Possesses the ability to; (1) guide the resolution of unusually complex technical problems; (2) develop solutions to complex problems that require the regular use of ingenuity and creativity ; (3) champion the development of new concepts and principles; and (4) serve as an expert spokesperson on those concepts and principles. Demonstrates excellent communication, computer, presentation, and interpersonal skills, be customer focused, and able to work on a self-initiated basis or in a team environment. Able to work extended hours and travel as required. US Citizenship is required.
    $94k-148k yearly est. 60d ago
  • Scientist, Life Science Organic Chemistry - San Diego, CA

    Dsm-Firmenich

    Senior principal scientist job in San Diego, CA

    Scientist, Life Science Organic Chemistry Join our dynamic and cutting-edge research program focused on the health and chemical senses. As part of our multi-disciplinary discovery team, you will collaborate with our global R&D community to explore receptor-driven discovery of new bioactive ingredients and their industrial applications. We are seeking an exceptional and goal-oriented expert in the field of organic and medicinal chemistry. The ideal candidate will be an accomplished synthetic organic chemist with a proven track record of conducting science-based and computer-aided discovery of new bioactive and/or bio-functional molecules. DSM-Firmenich is a leading global provider of innovative solutions in nutrition, health, and sustainable living. We combine scientific expertise with cutting-edge technology to develop sustainable solutions that improve the quality of life for people today and for future generations. Our collaborative approach and commitment to excellence make us a trusted partner for our customers worldwide. **Your Key Responsibilities:** + Leverage expertise in organic chemistry and medicinal chemistry to design and synthesize small molecules with optimal properties. + Partner cross-functionally with other internal Science and Research domains including Biology, Computational Science, AI, and Machine Learning teams to speed up discovery + Work with Clinical Research Organizations to maximize the synthesis of libraries and specific compounds. + Maintain and understanding of relevant cutting-edge science (e.g. new chemistries & medicinal chemistry techniques and principles) and technology trends (e.g. automation) to propose new creative solutions or ideas to address technology gaps and save cost. + Analyse and present chemistry and SAR data at internal and external meetings and conferences + Draft and submit invention disclosure, publication manuscripts, and lab reports **We Bring:** + A science led company with cutting edge research and creativity everywhere - from Science and Research breakthroughs to sustainability game-changers, you'll work on what's next + A unique career paths with growth that keeps up with you - you join an industry leader that will develop your expertise and leadership + A chance to impact millions of consumers every day + A community where your voice matters + A culture that lifts you up - with collaborative teams, shared wins, and people who cheer each other on. + Competitive pay, career growth opportunities, and outstanding benefit programs. **You Bring:** + Up to 5 years ofpost-PhD experience (or equivalent) in organic or medicinal chemistry in an academic, biotechnology, or pharmaceutical environment + Knowledge in modern medicinal chemistry and lead optimization techniques, including multi-parameter bioactivity and physicochemical properties optimization + Strong synthetic and analytical chemistry skills with ability to design and implement multi-steps synthesis and characterization of complex molecules + Familiarity with molecular modeling and other computational tools useful for speeding up the discovery of bioactive small molecules + Great team player and excellent communicator with a strong drive for collaboration, excellence, and impact + Ability to innovate and thrive in a multidisciplinary environment The salary or hourly wage scale provided reflects the pay range dsm-firmenich expects to pay the successful candidate for the position. Individual pay offered will be based on the applicant's job-related skills, experience, relevant education, or training, and primary work location. This position is also eligible for bonuses and benefits, which are not included in the pay scale provided. Salary $97,000-$139,000. **About dsm-firmenich** At dsm-firmenich, we don't just meet expectations - we go beyond them. Join our global team powered by science, creativity, and a shared purpose: to bring progress to life. From elevating health to making fortified food and sustainable skincare, the impact of your work here will be felt by millions - every single day. Whether it's fragrance that helps you focus, alternative meat that's better for the planet, or reducing sugar without losing flavor, this is where you help shape the future of nutrition, health, and beauty for everyone, everywhere. And while you're making a difference, we'll make sure you're growing too. With learning that never stops, a culture that lifts you up and the freedom to move across businesses, teams, and borders. Your voice matters here. And your ideas? They're essential to our future. Because real progress only happens when we **go beyond, together** . **The application process** Interested in this position? Please apply online by uploading your resume in English. **Inclusion, belonging and equal opportunity statement** At dsm-firmenich, we believe being a force for good starts with the way we treat each other. When people feel supported, included, and free to be themselves, they do their best work - and that's exactly the kind of culture we're building. A place where opportunity is truly equal, authenticity is celebrated, and everyone has the chance to grow, contribute, and feel they belong. We're proud to be an equal opportunity employer, and we're serious about making our hiring process as fair and inclusive as possible. From inclusive language and diverse interview panels to thoughtful sourcing, we're committed to reflecting the world we serve. We welcome candidates from all backgrounds - no matter your gender, ethnicity, sexual orientation, or anything else that makes you, you. And if you have a disability or need any support through the application process, we're here to help - just let us know what you need, and we'll do everything we can to make it work. **Agency statement** We're managing this search directly at dsm-firmenich. If you're applying as an individual, we'd love to hear from you. We're not accepting agency submissions or proposals involving fees or commissions for this role
    $97k-139k yearly 60d+ ago
  • Scientist I

    Lancesoft 4.5company rating

    Senior principal scientist job in San Diego, CA

    Qualifications: • General knowledge of Biology, Immunology, Flow Cytometry or other related discipline. • Familiarity with operation of routine laboratory instruments. • Effective oral and written communication skills. • Effective interpersonal skills. • Effective analytical and problem solving skills. • Demonstrated ability to to follow established policies and procedures. • Demonstrated ability to interpret and present data of simple to moderate complexity. • Demonstrated ability to keep accurate and complete laboratory records and logs. • Previous experience with Flow Cytometry and related software is a plus. Education and Experience: • Minimum Bachelor's degree in a biological science discipline • Minimum 0-2 years of relevant experience Responsibilities: The Scientist I is responsible for assisting in the development and evaluation of new reagents and enhancements to existing reagents. Executes experiments independently and evaluates and discusses data. Presents and explains material of simple to moderate complexity and prepares protocols and other documents. Has job skill and technical knowledge to perform established procedures. Under general supervision, plans, designs and performs reagent development activities. Work focus includes areas of Immunology, Cell Biology and Stem Cells using techniques such as multi-parameter flow cytometery, cell stimulation and cell culture assays. Direction is defined jointly with supervisor to meet short and mid-term goals. This position will regularly work with human and laboratory animal tissues. Primary duties include the following: • Performs experiments to evaluate new reagents using flow cytometer.. • Prepares protocols, reports and summaries. • Tabulates and analyzes experimental dat Qualifications Minimum Bachelor's degree in a biological science discipline Additional Information College degree or HS Diploma with +5 years biopharmaceutical industry experience
    $99k-134k yearly est. 2d ago
  • Scientist II

    WuXi Apptec

    Senior principal scientist job in San Diego, CA

    HD Biosciences, Inc. (San Diego), a WuXi AppTec Company, is expanding its in vitro Pharmacology. We're seeking highly skilled and motivated Scientist II to lead assay development projects and support target discovery and validation efforts for HTS and assay screening group. **Responsibilities** - Works on routine assignments per written procedures, where ability to recognize deviation from accepted practice is required. - Normally receives minimal instructions on routine work and detailed instructions on new assignments. - Works under close supervision from supervisor or senior personnel. - Performs support functions (e.g. Runner function) in the (fill in Specific Dept.) - Ability to work in a team environment and independently as required - Maybe required to work Holidays and weekends - Maybe required to work Overtime ( Remove only for Exempt positions) - Contributes to the overall operations and to the achievement of departmental goals - Perform job specific tasks in compliance with applicable Regulations, International Standards, and WuXi AppTec Policies and Standard Operating Procedures. - Thorough understanding of Good Laboratory Practices and Good Manufacturing Practices - Other duties as assigned - May be required to assist in other departments Job Requirements: - Design, implement, and perform projects for functional assay development. - Proven hands-on experience with cell based assays and biochemical assays. - Support target discovery and validation efforts by independently developing and performing assays to evaluate biologic drug targets and candidates, such as GPCR, Ion-channels, Enzymatic assay, kinase assays, etc. - Develop assays in biochemical and cell based formats that are suitable for SAR screening in 96 or 384-well formats. - Deep understanding of molecular biology and cell biology and experience in mammalian cell culture and compound handling techniques. - Experience with methods such as luminescence, fluorescence, absorbance and radiometric detection is preferred - Scientific creativity, critical thinking and fast learning capabilities. - Industrial drug R& D experience is a plus - Effectively communicate with internal team colleagues and external clients to promote a world-class services. **Qualifications** - 5-10 years of relevant experience or equivalent - Master or PhD degree preferred in Biochemistry, Biotechnology or Molecular Biology. - Demonstrated strong understanding of complex scientific procedures with technical proficiency in molecular and cell biology - Industry experience in Pharma/Biotech or close exposures to R&D process is preferred. Prior work in CRO in a commercial setting will be considered an additional strength. - Outstanding written and oral communication skills, and interpersonal skills to seamlessly fit within a teamwork driven environment. Knowledge / Skills / Abilities: - Proficient in Oral & Written communication skills - Need to be able to read, write and understand English (Mandarin) - Proficient in Microsoft (Excel, Word, Outlook) - Travel is required X% , Domestic/International, Daily / Overnight Physical Requirements: - Must be able to work in an office environment with minimal noise conditions. - Must be able to work in Lab setting with exposure to Animals/biohazards / Chemicals (List specific Chemicals) - Must not have animal allergies to applicable species in this facility - Must be able to wear appropriate PPE - Must be able to work in environment with variable noise levels - Ability to stand /Sit/walk for long periods of time - Ability to Lift 10 lbs routinely - Ability to crouch, bend, twist, and reach - Ability to push/pull 10 lbs routinely/ often / occasionally - Clarity of Vision - Ability to identify and distinguish colors - Must be able to perform activities with repetitive motions - Ability to climb Ladders / Stairs / Scaffolding - Ability to work in variable temperatures high to freezing - Inside/outside working conditions Anticipated salary range: $80,322 to $104,00 An Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, or protected veteran status and will not be discriminated against on the basis of disability This job description does not state or imply that the above are the only duties and responsibilities assigned to this position. Employees holding this position will be required to perform any other job-related duties as requested by Management. **Need help finding the right job?** We can recommend jobs specifically for you! An Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, or protected veteran status and will not be discriminated against on the basis of disability An Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, or protected veteran status and will not be discriminated against on the basis of disability (************************************************************************************************** **Job Locations** _US-CA-San Diego_ **Job ID** _2026-13936_
    $80.3k-104k yearly 8d ago
  • Senior Biologics Scientist - Antibodies & Bispecifics Lead

    Califesciences

    Senior principal scientist job in San Diego, CA

    A global health care leader in San Diego is seeking an experienced scientist to lead biologics discovery and development. The role includes designing innovative biologics, mentoring a team, and driving projects from discovery to IND-enabling studies. Candidates should have strong knowledge in therapeutic protein design and a relevant degree with extensive experience. A comprehensive benefits package is included, along with competitive salary range between $156,900.00 and $247,000.00. #J-18808-Ljbffr
    $156.9k-247k yearly 1d ago
  • Principal Biotherapeutics Scientist - Discovery & Antibody

    The Antibody Society

    Senior principal scientist job in San Diego, CA

    A leading biopharmaceutical company in San Diego is seeking a highly motivated Principal Scientist to lead therapeutic programs in biotherapeutics. The ideal candidate must possess expertise in high-throughput biologics screening and have a solid foundation in protein sciences and antibody discovery. Key responsibilities include advancing biologics projects, partnering with functional areas, and mentoring a small team of scientists. The role requires excellent communication skills and a strong track record in drug discovery. #J-18808-Ljbffr
    $112k-173k yearly est. 18h ago
  • Lead Scientist, In Vitro Antibody Discovery

    Eli Lilly and Company 4.6company rating

    Senior principal scientist job in San Diego, CA

    A global healthcare leader in San Diego seeks a highly motivated scientist to contribute to the discovery and development of biotherapeutics. The role involves discovering and optimizing antibodies, utilizing flow cytometry, and requires strong skills in molecular biology and biochemistry. Ideal candidates should have significant industry experience and be detail-oriented, with excellent communication skills. Competitive compensation and benefits include a flexible benefits package and bonus potential. #J-18808-Ljbffr
    $120k-159k yearly est. 18h ago

Learn more about senior principal scientist jobs

How much does a senior principal scientist earn in San Diego, CA?

The average senior principal scientist in San Diego, CA earns between $87,000 and $204,000 annually. This compares to the national average senior principal scientist range of $83,000 to $169,000.

Average senior principal scientist salary in San Diego, CA

$133,000

What are the biggest employers of Senior Principal Scientists in San Diego, CA?

The biggest employers of Senior Principal Scientists in San Diego, CA are:
  1. Neurocrine Biosciences
  2. Pfizer
  3. Arrowhead Pharmaceuticals
  4. PIVOTAL
  5. Altos Labs
  6. Illumina
  7. Johnson & Johnson
  8. Torrey Pines High School
  9. Northrop Grumman
  10. Schrdinger
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