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The average salary for a Clinical Applications Analyst stands at $82,905 annually, reflecting the vital role these professionals play in healthcare IT systems. This salary can fluctuate based on factors such as geographical location and years of experience.
Clinical Applications Analysts typically earn between $65,000 to $100,000 per year, depending on specific responsibilities and the complexity of the systems they manage. The highest salaries are often found in metropolitan areas with a high demand for healthcare IT expertise.
States like California, New York, and Texas report some of the highest salaries for Clinical Applications Analysts. The demand for skilled analysts in urban centers drives up compensation, making these locations attractive for job seekers.
For those considering a career as a Clinical Applications Analyst, understanding salary trends is crucial. By targeting job opportunities in high-paying states and focusing on gaining relevant experience, candidates can position themselves for success in this essential role within the healthcare industry.
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The highest-paying states for clinical applications analysts are Washington, New Jersey, and New York. The lowest average clinical applications analyst salary states are Oklahoma, South Carolina, and Mississippi.
| Rank | State | Avg. salary | Hourly rate |
|---|---|---|---|
| 1 | New Jersey | $96,402 | $46.35 |
| 2 | Washington | $101,318 | $48.71 |
| 3 | New York | $96,170 | $46.24 |
| 4 | Rhode Island | $88,426 | $42.51 |
| 5 | California | $91,972 | $44.22 |
| 6 | District of Columbia | $93,133 | $44.78 |
| 7 | New Mexico | $87,947 | $42.28 |
| 8 | Delaware | $92,204 | $44.33 |
| 9 | Illinois | $88,308 | $42.46 |
| 10 | West Virginia | $91,715 | $44.09 |
| 11 | North Carolina | $81,039 | $38.96 |
| 12 | Pennsylvania | $84,260 | $40.51 |
| 13 | Maryland | $84,800 | $40.77 |
| 14 | Minnesota | $83,026 | $39.92 |
| 15 | Hawaii | $87,432 | $42.03 |
| 16 | Arkansas | $82,902 | $39.86 |
| 17 | Montana | $79,083 | $38.02 |
| 18 | Arizona | $79,272 | $38.11 |
| 19 | North Dakota | $75,581 | $36.34 |
| 20 | Nevada | $78,110 | $37.55 |
| 21 | New Hampshire | $84,258 | $40.51 |
| 22 | Kentucky | $80,470 | $38.69 |
| 23 | Alabama | $80,695 | $38.80 |
| 24 | Oregon | $78,745 | $37.86 |
| 25 | Louisiana | $77,959 | $37.48 |
| 26 | Michigan | $76,231 | $36.65 |
| 27 | Maine | $72,771 | $34.99 |
| 28 | Wisconsin | $76,638 | $36.85 |
| 29 | Indiana | $75,237 | $36.17 |
| 30 | Georgia | $78,885 | $37.93 |
| 31 | Massachusetts | $81,607 | $39.23 |
| 32 | Vermont | $74,816 | $35.97 |
| 33 | Florida | $73,191 | $35.19 |
| 34 | South Dakota | $72,190 | $34.71 |
| 35 | Virginia | $74,678 | $35.90 |
| 36 | Connecticut | $73,581 | $35.38 |
| 37 | Kansas | $70,726 | $34.00 |
| 38 | Texas | $73,133 | $35.16 |
| 39 | Alaska | $77,250 | $37.14 |
| 40 | Ohio | $70,589 | $33.94 |
| 41 | Idaho | $70,583 | $33.93 |
| 42 | Colorado | $69,619 | $33.47 |
| 43 | Iowa | $69,654 | $33.49 |
| 44 | Utah | $68,974 | $33.16 |
| 45 | Wyoming | $69,092 | $33.22 |
| 46 | Nebraska | $66,004 | $31.73 |
| 47 | Oklahoma | $67,905 | $32.65 |
| 48 | Missouri | $64,189 | $30.86 |
| 49 | Tennessee | $65,304 | $31.40 |
| 50 | South Carolina | $67,343 | $32.38 |
| 51 | Mississippi | $66,639 | $32.04 |
The highest-paying cities for clinical applications analysts are Redmond, WA, San Francisco, CA, and New York, NY.
| Rank | City | Avg. salary | Hourly rate |
|---|---|---|---|
| 1 | Redmond, WA | $101,866 | $48.97 |
| 2 | San Francisco, CA | $99,768 | $47.97 |
| 3 | New York, NY | $96,503 | $46.40 |
| 4 | New Brunswick, NJ | $96,451 | $46.37 |
| 5 | Wilmington, DE | $92,255 | $44.35 |
| 6 | Chicago, IL | $88,556 | $42.58 |
| 7 | Jonesboro, AR | $83,027 | $39.92 |
| 8 | Duluth, MN | $82,901 | $39.86 |
| 9 | Kingman, AZ | $82,628 | $39.73 |
| 10 | Greenville, NC | $82,530 | $39.68 |
| 11 | Birmingham, AL | $80,323 | $38.62 |
| 12 | Fargo, ND | $75,649 | $36.37 |
| 13 | Columbus, IN | $75,135 | $36.12 |
| 14 | Chesapeake, VA | $74,964 | $36.04 |
| 15 | Orlando, FL | $73,927 | $35.54 |
| 16 | San Antonio, TX | $73,902 | $35.53 |
| 17 | Cleveland, OH | $70,962 | $34.12 |
| 18 | Denver, CO | $69,508 | $33.42 |
| 19 | Draper, UT | $68,685 | $33.02 |
| 20 | Saint Louis, MO | $64,890 | $31.20 |
A clinical applications analyst's salary ranges from $62,000 a year at the 10th percentile to $110,000 at the 90th percentile.

| Percentile | Annual salary | Monthly salary | Hourly rate |
|---|---|---|---|
| 90th Percentile | $110,000 | $9,167 | $53 |
| 75th Percentile | $96,000 | $8,000 | $46 |
| Average | $82,905 | $6,909 | $40 |
| 25th Percentile | $71,000 | $5,917 | $34 |
| 10th Percentile | $62,000 | $5,167 | $30 |
The highest paying types of clinical applications analysts are senior applications analyst, senior technical analyst, and functional analyst.
| Job title | Annual salary | Monthly salary | Hourly rate | Job openings |
|---|---|---|---|---|
| Information Technology Consultant | $84,790 | $7,066 | $40.76 | 142,475 |
| Analyst Lead | $95,264 | $7,939 | $45.80 | 122,353 |
| Programmer Analyst | $71,563 | $5,964 | $34.41 | 248,781 |
| Analyst | $73,007 | $6,084 | $35.10 | 253,138 |
| GIS Analyst | $63,718 | $5,310 | $30.63 | 49,491 |
| Software Analyst | $78,400 | $6,533 | $37.69 | 274,053 |
Top companies hiring clinical applications analysts now:
Clinical applications analyst salaries at Hospital for Special Surgery and MemorialCare are the highest-paying according to our most recent salary estimates. In addition, the average clinical applications analyst salary at companies like Sutter Health and BronxCare Health System are highly competitive.
| Rank | Company | Average salary | Hourly rate |
|---|---|---|---|
| 1 | Hospital for Special Surgery | $104,243 | $50.12 |
| 2 | MemorialCare | $101,486 | $48.79 |
| 3 | Sutter Health | $99,088 | $47.64 |
| 4 | BronxCare Health System | $98,315 | $47.27 |
| 5 | Montefiore Mount Vernon Hospital | $96,971 | $46.62 |
| 6 | Highland General Hospital | $94,323 | $45.35 |
| 7 | Duke University Health System | $93,598 | $45.00 |
| 8 | Randstad North America, Inc. | $93,193 | $44.80 |
| 9 | Forest Laboratories | $92,937 | $44.68 |
| 10 | St. Peter's Health | $92,828 | $44.63 |
| 11 | Medstar Health | $92,731 | $44.58 |
| 12 | CHKD Thrift Store | $92,227 | $44.34 |
| 13 | Hoag | $91,882 | $44.17 |
| 14 | Columbus Regional Health | $90,848 | $43.68 |
| 15 | Dean Health Plan | $90,683 | $43.60 |
| 16 | Mount Sinai Health System | $90,659 | $43.59 |
| 17 | Novant Health | $90,548 | $43.53 |
| 18 | Children's Hospital of Philadelphia | $90,045 | $43.29 |
| 19 | CyberCoders | $89,825 | $43.19 |
| 20 | University Healthcare Alliance | $89,808 | $43.18 |
The average clinical applications analyst salary has risen by $13,350 over the last ten years. In 2014, the average clinical applications analyst earned $69,555 annually, but today, they earn $82,905 a year. That works out to a 8% change in pay for clinical applications analysts over the last decade.
Compare clinical applications analyst salaries for cities or states with the national average over time.
Compare clinical applications analyst salaries for individual cities or states with the national average.
| Year | Avg. salary | Hourly rate | % Change |
|---|---|---|---|
| 2025 | $82,900 | $39.86 | +3.3% |
| 2024 | $80,200 | $38.55 | +2.3% |
| 2023 | $78,400 | $37.67 | +0.5% |
| 2022 | $77,900 | $37.47 | +1.2% |
| 2021 | $77,000 | $37.03 | +1.6% |
| Company | Job | Location | Date added | Salary |
|---|---|---|---|---|
| Essentia Health | Clinical Applications Analyst I or II-Resolute | Duluth, MN | 06/19/2025 | $56,722 |
| Rush University Medical Center | Clinical Application Analyst | Chicago, IL | 06/11/2025 | $65,678 |
| Sequoia Living | Clinical Applications Analyst | San Francisco, CA | 05/27/2025 | $133,800 |
| Hoag Memorial Hospital Presbyterian | Mychart Applications Analyst III-Epic-IT Hoag Clinic (Costa Mesa, CA, US, 92626) | Costa Mesa, CA | 05/04/2025 | $113,074 |
| Tag-The Aspen Group | Clinical Application Analyst | Chicago, IL | 04/23/2025 | $75,000 |
| Deaconess Health System | Clinical Application Analyst-Clindoc-Digital Technology Services | Evansville, IN | 04/18/2025 | $69,680 |
| Mahec | Clinical Applications Analyst II | Asheville, NC | 04/11/2025 | $63,700 |
| Alliance of Professionals & Consultants, Inc. | Radiology Clinical Applications Analyst | Raleigh, NC | 03/26/2025 | $90,000 |
| Deaconess Health System | Clinical Application Analyst-Sunquest-Lab LIS | Evansville, IN | 03/25/2025 | $59,717 |
| Nshs | Applications Analyst II-IT Clinical Apps | Skokie, IL | 02/25/2025 | $69,810 |
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