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Bioinformatics Engineer remote jobs

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  • Full-Stack Software Engineer - PHP - REMOTE

    Parento

    Remote job

    **Parento** is the first provider for paid parental leave, distributing the first and only paid parental leave insurance and parental support program. Our holistic program enables companies to offer paid maternity and paternity leave to all employees. Designed to support working parents while alleviating HR's workload, Parento's white glove leave concierge handles the complexities of leave management, payroll calculations, compliance, and claims, while providing emotional and parent coaching for employees. Our proprietary program boasts a 95% return-to-work rate and guides employees through the process before, during, and after leave to ensure a seamless re-onboarding. **About the Role** We're seeking a driven, curious, and detail-oriented **Full Stack Software Engineer** to join our growing engineering team. This role is ideal for someone with strong skills in **PHP**, **Laravel**, and **VueJS**, that's eager to contribute to real-world SaaS products and platforms. You'll work on core systems powering our customer-facing web portal and backend infrastructure while shaping the future of a modern insurance-based program. **What You'll Do** Develop, test, and maintain scalable backend services that power an enterprise customer portal using **PHP** and the **Laravel** framework. Build and enhance frontend interfaces using **Tailwind CSS** and **VueJS**, ensuring responsive, user-friendly design. Collaborate closely with our product manager, designers, VP of Engineering, and other internal stakeholders to turn requirements into robust features Work on SaaS-based architecture, helping optimize performance, maintainability, reliability and scalability. Participate in code reviews, sprint planning, and system design discussions. Comfortable using AI code-generation tools (Cursor AI, Claude, Copilot, etc.) Assist in integrating, training and applying **machine learning algorithms** or **big data pipelines** to production workflows Contribute to improving the developer experience, CI/CD processes, and internal tools that help with developer productivity **Technical skills and experience** Solid proficiency in **PHP**, **Laravel**, and **VueJS** Academic or hands-on experience working on **SaaS products** and **web portals** Exposure to or interest in big data processing and **machine learning** concepts Familiarity with version control systems (e.g., Git), REST APIs, and databases like MySQL or MariaDB. Familiarity with analytics tools such as Metabase. Familiarity with a cloud-based architecture that spans multiple public clouds (AWS, Digital Ocean, Google Cloud). Excellent written communication skills (we collaborate a LOT on email & Slack). **Preferred (But Not Required)** Prior freelance or full-time work experience in **Fintech** or **InsurTech** industries Certification on using any public cloud platform (e.g., AWS, GCP, Azure) Experience with data pipelines or ML frameworks (e.g., TensorFlow, Spark) Certification in Kubernetes (Certified Kubernetes Application Developer - CKAD) Comfortable working on WordPress and CMS platforms like Statamic or Ghost **Salary:** $125-$140k/year
    $125k-140k yearly 1d ago
  • Cloud Engineer

    Business Centric Technology

    Remote job

    Our client is building the future of its cloud infrastructure and seeking a Sr. Cloud Engineer to lead the way. You'll design, secure, and scale Microsoft Azure and M365 environments-driving innovation and reliability across our systems. This role is ideal for a hands-on engineer who thrives working independently and takes pride in delivering results that matter. SALARY: Up to $125K depending on candidate's experience, etc. WHAT'S IN IT FOR YOU: Enjoy the flexibility of a remote work model (Texas-based preferred; quarterly on-site meetings in DFW) Medical, Dental, Vision Insurance with Flexible Spending Account Unlimited PTO Life Insurance, AD&D, & Supplemental Life Short- & Long-term Disability Tuition Benefits WHAT YOU'LL DO: Architect, deploy, and maintain Azure cloud solutions and Microsoft 365 environments. Build automation with PowerShell, Azure CLI, and IaC tools (ARM, Bicep). Implement and monitor cloud security, compliance, and governance best practices. Develop CI/CD pipelines to streamline deployments. Collaborate with cross-functional teams on migrations and new solutions. Stay ahead of emerging technologies and continuously improve performance and cost-efficiency. WHAT YOU'LL BRING: 5+ years of hands-on Azure and M365 experience. Strong grasp of cloud security and IAM. Proficiency in scripting and automation using PowerShell or similar tools. Experience with CI/CD pipelines and DevOps practices. Azure certifications (AZ-104, AZ-305) or equivalent experience. Self-driven, detail-oriented, and ready to lead by example. APPLY TODAY! CP# 8511
    $125k yearly 5d ago
  • ETL/ELT Data Engineer (Secret Clearance) - Hybrid

    Launchcode 2.9company rating

    Remote job

    LaunchCode is recruiting for a Software Data Engineer to work at one of our partner companies! Details: Full-Time W2, Salary Immediate opening Hybrid - Austin, TX (onsite 1-2 times a week) Pay $85K-$120K Minimum Experience: 4 years Security Clearance: Active DoD Secret Clearance Disclaimer: Please note that we are unable to provide work authorization or sponsorship for this role, now or in the future. Candidates requiring current or future sponsorship will not be considered. Job description Job Summary A Washington, DC-based software solutions provider founded in 2017, specializes in delivering mission-critical and enterprise solutions to the federal government. Originating from the Department of Defense's software factory ecosystem, the company focuses on Command and Control, Cybersecurity, Space, Geospatial, and Modeling & Simulation. The company leverages commercial technology to enhance the capabilities of the DoD, IC, and their end-users, with innovation driven by its Innovation centers. The company has a presence in Boston, MA, Colorado Springs, CO, San Antonio, TX, and St. Louis, MO. Why the company? Environment of Autonomy Innovative Commercial Approach People over process We are seeking a passionate Software Data Engineer to support the Army Software Factory (ASWF) in aligning with DoDM 8140.03 Cyber Workforce requirements and broader compliance mandates. The Army Software Factory (ASWF), a first-of-its-kind initiative under Army Futures Command, is revolutionizing the Army's approach to software development by training and employing self-sustaining technical talent from across the military and civilian workforce. Guided by the motto “By Soldiers, For Soldiers,” ASWF equips service members to develop mission-critical software solutions independently-especially vital for future contested environments where traditional technical support may be unavailable. This initiative also serves as a strategic prototype to modernize legacy IT processes and build technical readiness across the force to ensure battlefield dominance in the digital age. Required Skills: Active DoD Secret Clearance (Required) 4+ years of experience in data science, data engineering, or similar roles. Expertise in designing, building, and maintaining scalable ETL/ELT pipelines using tools and languages such as Python, SQL, Apache Spark, or Airflow. Strong proficiency in working with relational and NoSQL databases, including experience with database design, optimization, and query performance tuning (e.g., PostgreSQL, MySQL, MongoDB, Cassandra). Demonstrable experience with cloud data platforms and services (e.g., AWS Redshift, S3, Glue, Athena; Azure Data Lake, Data Factory, Synapse; Google BigQuery, Cloud Storage, Dataflow). Solid understanding of data warehousing concepts (e.g., Kimball, Inmon methodologies) and experience with data modeling for analytical purposes. Proficiency in at least one programming language commonly used in data engineering (e.g., Python, Java, Scala) for data manipulation, scripting, and automation. CompTIA Security+ Certified or otherwise DoDM 8140.03 (formerly DoD 8570.01-M) compliant. Nice to Have: Familiarity with SBIR technologies and transformative platform shifts Experience working in Agile or DevSecOps environments 2+ years of experience interfacing with Platform Engineers and data visibility team, manage AWS resources, and GitLab admin #LI-hybrid #austintx #ETLengineer #dataengineer #army #aswf #clearancejobs #clearedjobs #secretclearance #ETL
    $85k-120k yearly 2d ago
  • Scada Ignition Engineer

    Hanwha Convergence USA 4.1company rating

    Remote job

    SCADA Engineer will be responsible for providing leadership and technical expertise in design, development and delivery of Hanwha Convergence SCADA/PPC solutions for the renewable energy industry. He or She will design, develop work packages, troubleshoot, and continuously improve the SCADA system including RTUs, RTACs, HMI, and electrical control systems on large scale PV and/or BESS projects. He or She also will conduct applicable tests and commissioning complying with local/international codes and standards. **Attention external recruitment firms, we will not accept any unsolicited resumes at this time. Please do not contact any internal member of our company to discuss the position or to solicit candidates. ** DUTIES: · Lead and manage the assigned projects with available resources for successful projects completion in a due date and a budget. · Provide project status reports to stakeholders, and support risk mitigation measures as needed to maintain project goals and objectives. · Lead the development of monitoring and control systems for utility scale renewable energy projects including but not limited to: Solar PV, Battery Energy Storage Systems. · Provide team oversight in the development of device points lists, IP address lists, Logic Diagrams, HMI mockups & assets, commissioning test plans and completion checklists, utilizing company defined documentation and standards. · Work within a team environment to define and implement product design standards and best practices that align with company goals and objectives. · Program and commission PPC, SCADA servers, data historians, and HMI systems. · Develop engineering work packages, construction work packages, inspection and test procedures, FAT/SAT, commissioning, and operation and maintenance procedures. · Identify applicable standards and collateral standards for the diverse applicable sites. · Lead any design changes required to ensure standards compliance or continuous improvement. · Perform technical presentations to clients including SCADA, PPC(Plant Power Control), and HEIS(Hanwha Energy Integration System) but not limited. · Mentor and train the less experienced engineers and technicians. · Conduct/facilitate risk analysis activities as required. · Perform other duties and/or tasks as required. SKILLS/EXPERIENCE/EDUCATION · Bachelor's degree in electrical, electronic, or computer engineering preferred. · Minimum 2+ years' direct experience in Ignition SCADA application, and other SCADA application engineering experience considered as an asset. · Schweitzer Engineering RTAC Platform experience considered as an asset. · Strong knowledge of design, installation and commissioning of SCADA networks using; Fiber Optics, Serial RS-232 / RS-485, Ethernet TCP/IP, MQTT. · Strong knowledge of industrial automation protocols including but not limited to; Modbus RTU/TCP, DNP3, OPC UA and DA. · Proficiency in reading and developing diagrams and schematics including but not limited to, power system, networking and control, electrical, mechanical and civil layouts. · Ability to solve problems and identify root causes as a part of investigation. · In-depth understanding of power plant operating procedures and control system interaction with governing bodies such as: Regional Compliance Entities, Independent System Operators (CAISO, ERCOT experience preferred), Transmission Operators, and Generator Operators. LANGUAGE SKILLS: · Ability to communicate effectively in English. · Communication in Korean is considered as an asset. WORK ENVIRONMENT: · This position can be offered with work from home. However, it's preferred to be at the office at Georgetown, TX and the candidates to be hired may be eligible for relocation assistance · Fast paced with priorities that often change to meet current priorities. · Travel to customer sites is required, and the ability to travel internationally with a valid passport. · Must be legally entitled to work in the USA and prepared to travel abroad. Hanwha Convergence is proud to be an at-will Equal Opportunity Employer and prohibits discrimination against race, color, religion, sex, sexual orientation, gender perception or identity, national origin, age, marital status, pregnancy, citizenship, disability, protected veteran status and any other classification protected by applicable federal, state or local law. This policy applies to all terms and conditions of employment, including recruiting, hiring, placement, promotion, termination, layoff, recall, transfer, leaves of absence, compensation and training. We are committed to the full inclusion of all qualified individuals. As part of this commitment, Hanwha Convergence will provide reasonable accommodations to all qualified individuals with disabilities to participate in the job application or interview process, to perform essential job functions, and/or to receive other benefits and privileges of employment. Please contact us to request accommodations. Nothing in this statement shall imply implicitly or explicitly a guarantee of employment outside our at-will employment opportunity. You may view your privacy rights by reviewing Hanwha Convergence Privacy Policy here or contacting our HR Team for a copy.
    $76k-111k yearly est. 2d ago
  • Senior DevOps Engineer

    Qorali

    Remote job

    Qorali are looking for a highly skilled individual that has a strong background in cloud environments, containerization, IaC and level 2 technical support skills. This role is focused within level 2 support in the organization, allowing you to experience a variety of technologies and challenges which will allow for strong professional growth. Expectations for role: Manage a hybrid cloud environment while supporting applications such as AWS to optimize performance, cost-efficiency, and security. Experience with Kubernetes clusters to deploy, scale and manage containerized applications. Experience in different DevOps tools to configure ServiceNow platforms to support other IT workflows and automate incident management. Level 2 technical support for complex problems involving troubleshooting, cloud infrastructure and application performance related to software engineering. Integrated with multiple teams like deployment, SRE, and software development teams. Monitoring logging solutions with comprehensive understanding, with a proactive approach to optimize system health and resolve issues. Technical Skills: Expertise in cloud engineering with AWS Substantial experience with troubleshooting and looking at log files to gather and monitor data for analysis. Comfortable with containerization using Kubernetes First-hand experience using ServiceNow Ability to enhance the environment within Level 2 technical support for a fast-paced, enterprise environment. Problem-solving, communication skills, and analytical mindset. Benefits: 15% Bonus 6% 401k Match 20+ days PTO Health, Vision, Dental & Life Plans 2 days of remote work per week
    $81k-108k yearly est. 2d ago
  • Data Engineer

    Harvey Nash

    Remote job

    We are looking for a Data Engineer in Austin, TX (fully remote - MUST work CST hours). Job Title: Data Engineer Contract: 12 Months Hourly Rate: $75- $82 per hour (only on W2) Additional Notes: Fully remote - MUST work CST hours SQL, Python, DBT, Utilize geospatial data tools (PostGIS, ArcGIS/ArcPy, QGIS, GeoPandas, etc.) to optimize and normalize spatial data storage, run spatial queries and processes to power analysis and data products Design, create, refine, and maintain data processes and pipelines used for modeling, analysis, and reporting using SQL (ideally Snowflake and PostgreSQL), Python and pipeline and transformation tools like Airflow and dbt • Conduct detailed data research on internal and external geospatial data (POI, geocoding, map layers, geometrics shapes), identify changes over time and maintain geospatial data (shape files, polygons and metadata) • Operationalize data products with detailed documentation, automated data quality checks and change alerts • Support data access through various sharing platforms, including dashboard tools • Troubleshoot failures in data processes, pipelines, and products • Communicate and educate consumers on data access and usage, managing transparency in metric and logic definitions • Collaborate with other data scientists, analysts, and engineers to build full-service data solutions • Work with cross-functional business partners and vendors to acquire and transform raw data sources • Provide frequent updates to the team on progress and status of planned work About us: Harvey Nash is a national, full-service talent management firm specializing in technology positions. Our company was founded with a mission to serve as the talent partner of choice for the information technology industry. Our company vision has led us to incredible growth and success in a relatively short period of time and continues to guide us today. We are committed to operating with the highest possible standards of honesty, integrity, and a passionate commitment to our clients, consultants, and employees. We are part of Nash Squared Group, a global professional services organization with over forty offices worldwide. For more information, please visit us at ****************************** Harvey Nash will provide benefits please review: 2025 Benefits -- Corporate Regards, Dinesh Soma Recruiting Lead
    $75-82 hourly 2d ago
  • Software Engineer III[80606]

    Onward Search 4.0company rating

    Remote job

    Onward Search is partnering with a leading tech client to hire a Software Engineer III to help build the next generation of developer infrastructure and tooling. If you're passionate about making developer workflows faster, smarter, and more scalable, this is the role for you! Location: 100% Remote (EST & CST Preferred) Contract Duration: 6 months What You'll Do: Own and maintain Bazel build systems and related tooling Scale monorepos to millions of lines of code Collaborate with infrastructure teams to define best-in-class developer workflows Develop and maintain tools for large-scale codebases Solve complex problems and improve developer productivity What You'll Need: Experience with Bazel build system and ecosystem (e.g., rules_jvm_external, IntelliJ Bazel plugin) Fluency in Java, Python, Starlark, and TypeScript Strong problem-solving and collaboration skills Passion for building highly productive developer environments Perks & Benefits: Medical, Dental, and Vision Insurance Life Insurance 401k Program Commuter Benefits eLearning & Education Reimbursement Ongoing Training & Development This is a fully remote, contract opportunity for a motivated engineer who loves working in a flow-focused environment and improving developer experiences at scale.
    $90k-128k yearly est. 2d ago
  • Software Engineer (Remote)

    It Associates 3.4company rating

    Remote job

    Remote (proximity to Chicago, Nashville or Manhattan would be a big plus) Regular travel is not required but will need to travel to corporate office 2 times a year Our client is looking to add a Software Developer that will be responsible for designing, developing, and maintaining high-quality software solutions that support the Firm's digital platforms. This role ensures the stability, scalability, and performance of all applications and services, while collaborating with cross-functional teams to drive continuous improvement in development practices and operational efficiency. Responsibilities Design and implement stable, scalable, and extensible software solutions. Ensure adherence to secure software development lifecycle (SDLC) best practices and standards. Drive the design and development of services and applications to meet defined service level agreements (SLAs). Work closely with end users and stakeholders to gather requirements and iterate on solutions that deliver business value. Proactively identify and resolve any obstacles affecting operational efficiency and service continuity. Provide ongoing support for developed applications and services, ensuring timely issue resolution. Participate in the Firm's change and incident management processes, adhering to established protocols. Software Development & Architecture Develop and maintain features for web-enabled applications using C# .NET Core. Write clean, scalable code with a focus on maintainability and performance. Implement robust, efficient SQL-based solutions, preferably using MS SQL. Develop and maintain user interfaces using modern frameworks, preferably Angular or Blazor. Ensure solutions are designed with an emphasis on security, efficiency, and optimization. Contribute to continuous integration and continuous delivery (CI/CD) pipelines, automating processes where possible. Collaboration & Optimization Collaborate closely with business analysts, quality assurance, and other developers to ensure solutions meet both functional and non-functional requirements. Foster a culture of positive, open communication across diverse teams, with a focus on collaboration and shared goals. Engage in regular reviews and feedback sessions to drive continuous improvement in development processes and practices. Provide mentorship and guidance to junior developers where appropriate, supporting their professional growth. Professional Conduct Demonstrates commitment to the firm's core values, including Accountability, Integrity, Excellence, Grit, and Love. Ensures all activities align with business objectives and project timelines. Communicates effectively, openly exchanging ideas and listening with consideration. Maintains a proactive, solution-oriented mindset when addressing challenges. Takes ownership of responsibilities and holds others accountable for their contributions. Continuously seeks opportunities to optimize processes, improve performance, and drive innovation. Qualifications 1-3+ years of expertise in C# .NET Core development Competence in SQL, preferably MS SQL Competence in UI work, preferably Angular and/or Blazor Strong structured problem-solving skills, with a history of using systematic and fact-based processes to improve mission-critical services. A focus on optimization and efficiency in processes. Experience working in a financial services firm would be a big plus Demonstrated expertise in fostering a culture of positive collaboration among cross-functional teams with diverse personalities, skill sets, and levels of experience. Highly developed communication skills A sense of urgency and a bias for action. For all non-bonus, non-commission direct hire positions: The anticipated salary range for this position is ($95,000 - $120,000). Actual salary will be based on a variety of factors including relevant experience, knowledge, skills and other factors permitted by law. A range of medical, dental, vision, retirement, paid time off, and/or other benefits are available.
    $95k-120k yearly 4d ago
  • Java Software Engineer

    Talent Groups 4.2company rating

    Remote job

    The position is 100% remote. The software team is based in Colorado and seeks to hire Colorado-based engineers so they can meet up for team-building events a few times a year. 3-month Contract to Hire, client is currently unable to offer sponsorship. Please, no C2C. We are seeking a Mid-Level Full Stack Software Engineer with strong expertise in backend Java and Spring Boot development. This engineer will contribute to designing, building, enhancing, and maintaining internal applications and services. This role operates entirely on-premise (no cloud environment), and works closely with cross-functional technical teams to deliver secure, reliable, and scalable software solutions. Experience with CI/CD pipelines is a strong plus but not a requirement. Responsibilities Back-End Development Design, develop, and maintain backend services using Java, Spring Boot, and related frameworks. Implement RESTful APIs, integrations, and data processing logic. Optimize application performance, reliability, and scalability. Write clean, maintainable, well-documented code aligned with internal standards. Full Stack Contributions Support and maintain front-end components (React, Angular, or similar), including UI enhancements and bug fixes. Collaborate with UI/UX designers to support modern, user-friendly interfaces. Systems & Collaboration Operate within an on-prem environment (no cloud deployment). Work closely with product owners, business analysts, QA engineers, and other developers throughout the SDLC. Participate in code reviews, requirement discussions, and architectural design sessions. Assist in troubleshooting, debugging, and resolving production issues. DevOps (Nice to Have) Contribute to or utilize CI/CD pipelines for automated builds, testing, and deployments. Work with tools such as Jenkins, GitLab CI, Bamboo, or similar on-prem pipeline tools (optional). Required Qualifications Bachelor's degree in Computer Science, Engineering, or related technical field (or equivalent experience). 3-5 years of professional software engineering experience. Strong proficiency with: Java Spring Boot / Spring Framework REST API development Experience with relational databases (PostgreSQL, Oracle, MySQL, etc.). Solid understanding of source-control systems (Git preferred). Ability to work in on-premise environments with traditional deployment models. Strong analytical, problem-solving, and communication skills. Preferred / Nice-to-Have Experience with CI/CD pipelines (Jenkins, GitLab, Bamboo, TeamCity, etc.). Basic front-end experience (React, Angular, Vue, or vanilla JavaScript). Experience working within regulated or highly secure software environments. Familiarity with message queues, integration patterns, or on-prem enterprise systems.
    $67k-94k yearly est. 3d ago
  • Associate Computational Scientist - AI/ML

    Jackson Laboratory 4.3company rating

    Remote job

    The Jackson Laboratory (JAX) is seeking an Associate Computational Scientist to join the AI/ML group within JAX Data Science. In this role, you will apply and develop advanced artificial intelligence and machine learning methods to analyze imaging and multi-omics data across diverse biomedical research areas, including cancer, aging, longevity, and neurodegenerative disorders. You will collaborate closely with research faculty and Scientific Services to advance JAX's strategic priorities, including bridging human and mouse biology through cellular models. This is a remote position within the U.S. We welcome applicants from across the country. Candidates located near our Farmington, CT or Bar Harbor, ME campuses will have opportunities for occasional in-person collaboration, which is preferred but not required. What You'll Contribute * Process and harmonize multi-omics and imaging datasets; analyze them using existing bioinformatics or AI/ML tools and adapt methods as needed. * Develop new approaches for spatial omics analysis and multimodal data integration across species and cell models under supervision. * Lead or contribute to multiple grant-funded projects, ensuring progress toward milestones with minimal supervision. * Prepare reports and manuscripts for projects you lead and contribute to grant applications. What You're Good At * Ph.D. in Bioinformatics, Computer Science, Biostatistics, Machine Learning, or a related field. * 2-5 years of experience in bioinformatics, computational biology, or related research, excluding time spent earning a Ph.D. * Working knowledge of cancer, aging, longevity, or neurodegenerative disorders preferred. * Proficiency in Python required. Familiarity with Numpy and Pandas; R experience is a plus. * Proven experience in image analysis. Additional experience in MRI and brain atlas is a plus. * Familiarity with deep learning frameworks (TensorFlow/Keras and/or PyTorch); experience with generative AI is a plus. * Hands-on experience with bioinformatics tools and single-cell RNA-seq analysis. * Demonstrated knowledge of statistical tests and machine learning algorithms, including linear mixed models, SVM, random forest, and gradient boosting. * Solid knowledge of Unix OS and version control systems. * Ability to effectively present research findings at conferences and workshops. * Proven track record of peer-reviewed publications and ability to contribute to grant proposals. The salary range is $98,885.00 - $165,554.00. Salary is determined based on qualifications and relevant experience. #LI-MJ4 #CA-MJ1 About JAX: The Jackson Laboratory is an independent, nonprofit biomedical research institution with a National Cancer Institute-designated Cancer Center and nearly 3,000 employees in locations across the United States (Maine, Connecticut, California), Japan and China. Its mission is to discover precise genomic solutions for disease and empower the global biomedical community in the shared quest to improve human health. Founded in 1929, JAX applies over nine decades of expertise in genetics to increase understanding of human disease, advancing treatments and cures for cancer, neurological and immune disorders, diabetes, aging and heart disease. It models and interprets genomic complexity, integrates basic research with clinical application, educates current and future scientists, and provides critical data, tools and services to the global biomedical community. For more information, please visit ************ EEO Statement: The Jackson Laboratory provides equal employment opportunities to all employees and applicants for employment in all job classifications without regard to race, color, religion, age, mental disability, physical disability, medical condition, gender, sexual orientation, genetic information, ancestry, marital status, national origin, veteran status, and other classifications protected by applicable state and local non-discrimination laws.
    $98.9k-165.6k yearly Auto-Apply 24d ago
  • Bioinformatics Engineer

    Tempus Ai 4.8company rating

    Remote job

    Passionate about precision medicine and advancing the healthcare industry? Recent advancements in underlying technology have finally made it possible for AI to impact clinical care in a meaningful way. Tempus' proprietary platform connects an entire ecosystem of real-world evidence to deliver real-time, actionable insights to physicians, providing critical information about the right treatments for the right patients, at the right time. Recent advancements in underlying technology have finally made it possible for AI to impact clinical care in a meaningful way. Tempus' proprietary platform connects an entire ecosystem of real-world evidence to deliver real-time, actionable insights to physicians, providing critical information about the right treatments for the right patients, at the right time. We are seeking a highly motivated and capable senior bioinformatics software scientist focused towards software and algorithm development and project management. This position requires experience with scientific programming, relational data systems, and algorithms development. Top candidates will also have experience managing software projects within a clinical setting and extensive experience with genomics data. Duties and Responsibilities: Ensure robust CI/CD patterns for clinical software and perform software verification for release and development. Develop software to enable scientists and engineers to access, analyze, and visualize bioinformatics data in a robust and efficient manner. Ensure high-quality analysis through on-going testing and verification of clinical pipelines and software. Develop tools to streamline creation and usage of scientific data across all teams and applications. Collaborate with subject matter experts, e.g., product, engineering, to design and maintain systems supporting medical devices and clinical pipelines. Work in interdisciplinary groups of scientists, engineers, and product developers to translate research into clinically actionable insights for our clients. Produce high quality and detailed documentation for all projects. Lead the design, development, and implementation of advanced bioinformatics analyses to support research and development goals. Support a team of bioinformatics scientists and analysts, providing technical guidance and professional development. Collaborate with cross-functional teams (e.g., biology, clinical, data science, software engineering) to define project requirements and deliverables. Develop and execute bioinformatics strategies aligned with organizational objectives. Evaluate, implement, and optimize computational tools, pipelines, and workflows for large-scale omics data analysis. Present findings and strategic recommendations to senior leadership and internal stakeholders. Stay current with emerging trends and technologies in bioinformatics, computational biology, and oncology Assist in resource and project planning as needed. Required Experience: Must have one of the following: PhD in Bioinformatics, Computational Biology, Genomics, Computer Science, or a related field (or equivalent experience). Masters in Bioinformatics, Computational Biology, Genomics, Computer Science, or a related field (or equivalent experience) and at 3+ years of relevant experience. 7+ years of relevant experience in bioinformatics Proficiency in programming languages and technology, including or similar to: Python, Typescript Databases: SQL or BigQuery Software containers, e.g., Docker Cloud computing, e.g., GCP or AWS Strong software development development skills Project management skills and ability to manage multiple priorities. Excellent communication and interpersonal skills, with experience presenting to executive audiences. Preferred: 2+ years experience in a leadership or management role role Critical thinking and creativity to approach solutions Experience with software testing and application development Experience in cancer genetics, immunology, or molecular biology Experience working with next-generation sequencing data Experience with Nextflow Self-driven and works well in interdisciplinary teams Experience interfacing with both scientific and engineering teams CHI: $85,000-$130,000 NYC/SF: $100,000-$145,000 The expected salary range above is applicable if the role is performed from Illinois and may vary for other locations (California, Colorado, New York). Actual salary may vary based on qualifications and experience. Tempus offers a full range of benefits, which may include incentive compensation, restricted stock units, medical and other benefits depending on the position. We are an equal opportunity employer. We do not discriminate on the basis of race, religion, color, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status.
    $100k-145k yearly Auto-Apply 11d ago
  • Scientist, Platform and TA Bioinformatics

    Moderna Theraputics

    Remote job

    The Role Moderna is seeking an exceptionally talented and highly motivated computational scientist with RNA biology background to work as part of a highly collaborative, multi-disciplinary, and fast-paced team. The successful candidate will develop and apply novel algorithms to design and optimize therapeutic mRNAs. Leveraging state-of-the-art bioinformatics, optimization, and machine learning approaches, this role directly contributes to advancing Moderna's mRNA design and engineering platform across multiple therapeutic areas. The ideal candidate has a deep foundation in algorithm development, demonstrated through peer-reviewed publications, and experience applying machine learning and deep learning to problems in RNA or related molecular systems. This position has significant visibility and potential for growth in a dynamic organization. Here's What You'll Do * Develop and apply novel combinatorial optimization algorithms to solve the needs and challenges specific to developing mRNA medicines * Work with RNA biologists, the high throughput screening team, and the NGS team to acquire appropriate datasets to train, build, refine machine learning models * Utilize deep understanding of scientific literature and concepts to drive innovation for mRNA design * Contribute to scientific and strategy discussions to advance and enhance the Moderna mRNA Platform * Maintain accountability for project success and result delivery * Communicate research findings to both technical and non-technical collaborators internally and externally Here's What You'll Need (Basic Qualifications) * Ph.D. in Computer Science, Bioinformatics, Computational Biology, Statistics, Physics, or related field with post-doctoral training * Algorithm development experience required * Experience applying machine learning and deep learning models required Here's What You'll Bring to the Table (Preferred Qualifications) * Experience with applications in RNA biology * Familiar with RNA secondary structure prediction tools and principles * 1+ year experience in industry * Experience analyzing NGS data from chemical probing experiments, e.g. SHAPE * Experience with programming or scripting language (multiple preferred), e.g. Python, R * High performance computing in a distributed/cloud environment, e.g. AWS * Software development best practices, including agile, version control, unit and integration testing, documentation, and deployment * Ability to manage multiple concurrent, fast-paced projects and to work with collaborators from both wet lab and dry lab * An established record of innovative research achievements in machine learning/bioinformatics reported in top-tier journals and patent applications * Excellent written and oral communication skills * Positive team building and teamwork skills: innate ability to influence, lead and inspire people, within function and beyond functional/company boundaries Pay & Benefits At Moderna, we believe that when you feel your best, you can do your best work. That's why our US benefits and global well-being resources are designed to support you-at work, at home, and everywhere in between. * Best-in-class healthcare coverage, plus voluntary benefit programs to support your unique needs * A holistic approach to well-being, with access to fitness, mindfulness, and mental health support * Family planning benefits, including fertility, adoption, and surrogacy support * Generous paid time off, including vacation, volunteer days, sabbatical, global recharge days, and a discretionary year-end shutdown * Savings and investment opportunities to help you plan for the future * Location-specific perks and extras The salary range for this role is $121,600.00 - $194,500.00. This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An individual's position within the salary range will be based on several factors including, but not limited to, specific competencies, relevant education, qualifications, certifications, experience, skills, performance, and business or organizational needs. The successful candidate may be eligible for an annual discretionary bonus, other incentive compensation, or equity award, subject to company plan eligibility criteria and individual performance. About Moderna Since our founding in 2010, we have aspired to build the leading mRNA technology platform, the infrastructure to reimagine how medicines are created and delivered, and a world-class team. We believe in giving our people a platform to change medicine and an opportunity to change the world. By living our mission, values, and mindsets every day, our people are the driving force behind our scientific progress and our culture. Together, we are creating a culture of belonging and building an organization that cares deeply for our patients, our employees, the environment, and our communities. We are proud to have been recognized as a Science Magazine Top Biopharma Employer, a Fast Company Best Workplace for Innovators, and a Great Place to Work in the U.S. If you want to make a difference and join a team that is changing the future of medicine, we invite you to visit modernatx.com/careers to learn more about our current opportunities. Our Working Model As we build our company, we have always believed an in-person culture is critical to our success. Moderna champions the significant benefits of in-office collaboration by embracing a 70/30 work model. This 70% in-office structure helps to foster a culture rich in innovation, teamwork, and direct mentorship. Join us in shaping a world where every interaction is an opportunity to learn, contribute, and make a meaningful impact. Moderna is a smoke-free, alcohol-free, and drug-free work environment. Equal Opportunities Moderna is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry or citizenship, ethnicity, disability, military or protected veteran status, genetic information, sexual orientation, marital or familial status, or any other personal characteristic protected under applicable law. Moderna is a place where everyone can grow. If you meet the Basic Qualifications for the role and you would be excited to contribute to our mission every day, please apply! Moderna is an E-Verify Employer in the United States. We consider qualified applicants regardless of criminal histories, consistent with legal requirements. Accommodations We're focused on attracting, retaining, developing, and advancing our employees. By cultivating a workplace that values diverse experiences, backgrounds, and ideas, we create an environment where every employee can contribute their best. Moderna is committed to offering reasonable accommodations to qualified job applicants with disabilities. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should contact the Accommodations team at leavesandaccommodations@modernatx.com. Export Control Notice This position may involve access to technology or data that is subject to U.S. export control laws, including the Export Administration Regulations (EAR). As such, employment is contingent upon the applicant's ability to access export-controlled information in accordance with U.S. law. Due to the nature of the work and regulatory requirements, only individuals who qualify as U.S. persons (citizens, permanent residents, asylees, or refugees) are eligible for this position. For this role Moderna is unable to sponsor non-U.S. persons to apply for an export control license. #LI-NH1 *
    $121.6k-194.5k yearly Auto-Apply 12d ago
  • Senior Bioinformatics Scientist

    Karius 4.2company rating

    Remote job

    About KariusKarius is a life science, venture-backed clinical metagenomics company, focused on elevating patient care through microbial insights. We are committed to advancing diagnostic science and technology to optimize the diagnosis and treatment of infectious diseases. Through the use of genomics and AI, we are driven to improve the diagnostic landscape for infectious diseases. Karius delivers unprecedented diagnostic insight detecting microbial cell-free DNA circulating in the body to assist physicians to make rapid treatment decisions. Why Should You Join Us?Karius' core mission is to conquer infectious diseases through innovations around genomic sequencing and machine learning. The company's platform is already delivering unprecedented insight into the microbial landscape, providing clinicians with a comprehensive test capable of identifying more than a thousand pathogens directly from blood. Through this journey, we realized that the microbial cell-free DNA platform may hold value that goes well beyond the direct diagnosis of infections. You, as part of the Karius team, will be able to see the immense opportunity to expand the human knowledge around this emerging topic and apply it directly to critical problems in human health and disease. Position SummaryYou are highly curious, creative, and driven by a desire for continuous growth with the ultimate goal of making a meaningful impact on patients' lives. As a key and integral member of the Computational Biomarker Discovery team, you will focus on deeply exploring and analyzing the complex biological interplay between diverse conditions and molecular data. In this role, you will help unlock and help unlock preliminary biological signatures to inform translational science and precision medicine beyond the conventional infectious disease arena, and into areas such as autoimmune and cancer. You will design analysis plans, execute computational workflows, partner for method and machine learning model development, and integrate biological rationale with data-driven insights to uncover meaningful connections. You bring a passion for applying technology in novel ways, generating innovative hypotheses, and revealing hidden patterns in data. Your curiosity and analytical rigor will drive discoveries that push the boundaries of biomarker research and patient care. Reports to: Director, Computational Biomarker Discovery Location: Redwood City, CA (Hybrid) or Remote (USA) Primary Responsibilities• Lead data analysis and interpretation of complex biological datasets, including next-generation sequencing (NGS), metagenomics, transcriptomics, fragmentomics, and single-cell analysis.• Create or adapt computational tools and algorithms to support biomarker discovery and workflows.• Drive bioinformatics aspects of cross-functional research projects in collaboration with scientific and medical leaders, under the guidance of the Director of Computational Biomarker Discovery.• Conduct deep exploration of the biological interplay between molecular data and disease conditions, generating insights to advance translational science.• Deliver preliminary biological signatures that inform precision medicine applications beyond infectious disease, including autoimmune disorders and oncology.• Partner in experimental design by defining analysis plans, selecting appropriate methodologies, and executing computational analyses with a strong grounding in biological rationale.• Collaborate closely with scientific, medical, engineering, and commercial teams to set company goals and support the development of new partnerships and products.• Ensure high standards of data integrity, quality control, and validation, while maintaining rigorous quality documentation and dissemination of scientific findings.• Provide clear visibility into areas of ownership and communicate weekly progress and results to stakeholders.• Continue to grow and learn in the necessary biological/scientific domains and technological aspects of the field through novel knowledge acquisition but also staying current with the latest relevant literature.• Share enthusiasm for exploring novel applications of Karius' technology platform to drive innovation and impact. What's Fun About the Job?Karius is operating at the edge of what is now known to be possible in infectious disease diagnostics. With that, comes a wave of new and incredible challenges and opportunities. To deliver on that value, you will be tapping into some of the most advanced technologies, architecting and innovating where the current solutions simply don't suffice. You will get to see how much your work really matters. Travel: Travel to HQ on a quarterly basis if remote. Physical RequirementsSubject to extended periods of sitting and/or standing, vision to monitor, and moderate noise levels. Work is performed in an office environment. Position Requirements• Ph.D. in computer science, statistics, mathematics, physics, genetics, bioinformatics, metagenomics, or related fields (preferably with a focus on computational biology or machine learning) with 3+ years of postdoctoral and/or industry experience; OR Master's degree with 5+ years of directly relevant industry experience.• Publications demonstrating the use of innovative mathematical or computational models to investigate and interpret biological and biomarker data.• Strong background in modern statistics and machine learning, including applications to biomarker discovery.• Proven proficiency with high-dimensional, large-scale datasets characterized by low signal-to-noise.• Demonstrated excellence in communication and collaboration within cross-functional, multidisciplinary teams.• Self-starter with the ability to independently drive results and influence project direction.• Evidence of innovation in connecting biological insights to complex mechanisms of microbiome and host-environment interactions.• Deep understanding and hands-on experience with bioinformatics tools, methods, and workflows, especially those related to next-generation sequencing (NGS) data analysis.• Familiarity with exploratory study and clinical trial designs and analyses, particularly in pharmaceutical or biotechnology applications. Personal Qualifications• Passionate, purpose-driven, and excited about Karius' mission: to conquer infectious diseases through innovations around genomic sequencing and machine learning.• Excellence at communication and collaboration within a cross-functional team.• Detail oriented with exceptional organizational and time management skills.• Self-starting mentality and ability to drive results.• Comfortable working in an environment which combines both research aspects as well as development.• Ability to work effectively and efficiently in a fast-paced (startup) environment. DisclaimerThe above is intended to describe the general nature and level of work being performed by individuals assigned to this position. It is not intended to be an exhaustive list of all duties, responsibilities, and skills required. Responsibilities and duties may change or be adjusted to meet the needs of the company, and additional duties may be assigned as necessary. The job description is subject to change at any time at the discretion of Karius. Equal Opportunity EmployerAt Karius, we value a diverse and inclusive workplace and provide equal employment opportunities for all applicants and employees and are committed to honor and invest in the full diversity of people, in our hiring, recruiting and development of employees across the Company. All qualified applicants for employment are encouraged to apply and will be considered without regard to an individual's race, color, sex, gender identity and gender expression (including transgender individuals who are transitioning, have transitioned, or are perceived to be transitioning to the gender with which they identify), religion, age, national origin or ancestry, citizenship, physical or mental disability, medical condition, family care status, marital status, domestic partner status, sexual orientation, genetic information, military or veteran status, or any other basis protected by federal, state or local laws. If you are unable to submit your application due to a disability, please contact us at *********************** and we will accommodate qualified individuals with disabilities.
    $77k-124k yearly est. Auto-Apply 60d+ ago
  • Scientist, Bioinformatics

    Modernatx

    Remote job

    Moderna is seeking an exceptionally talented and motivated bioinformatician to be a catalyst across Research and Technology Development, accelerating our mRNA medicines through cutting-edge computational analyses and bioinformatics pipeline development. In this role, you will advance how long- and short-read sequencing are used to characterize RNA and DNA at scale - designing algorithms, building robust bioinformatics pipelines, and delivering clear and decision-enabling insights. You will partner closely with wet-lab scientists to co-design experiments, apply novel methods on emerging sequencing platforms (with a strong focus on Oxford Nanopore Technologies, ONT), and stand up real-time and batch analytics that quantify quality attributes, uncover mechanisms, and guide process/assay development. The ideal candidate blends deep NGS/long-read sequencing expertise with strong software engineering, solid molecular biology background, and the curiosity to turn complex data into simple, actionable narratives. Here's What You'll Do: Develop and optimize ONT methods for DNA and RNA characterization (e.g. cDNA vs. direct RNA sequencing, barcoding, de-multiplexing). Build and maintain ONT analysis pipelines covering signal-level analysis, basecalling, alignment, polishing, and comprehensive data verification. Build intuitive visualization and reporting tools that communicate characterization and biological findings to technical and non-technical stakeholders. Develop and maintain documentation, SOPs, and best-practice guides; mentor colleagues and contribute to a culture of reproducibility and scientific rigor. Provide suggestions to wet lab scientists and contribute to experimental design Work cross-functionally across Research and Technology Development to deliver timely NGS/long-read analyses and feedback that improve experimental design and data quality. Contribute to scientific and strategy discussions focused on attributes specific to developing mRNA medicines Communicate findings internally and (as appropriate) externally Here's What You'll Bring to the Table: Ph.D. in Bioinformatics, Computational Biology, or related field with 1+ years of relevant industrial experience Technical expertise Practical data analysis experience with Oxford Nanopore data types (cDNA, direct RNA, demultiplexing), basecalling, signal-level methods, and downstream interpretation. Expert in Python and R programming, clean and well-tested code, packaging and documentation. Producing visualizations of complex NGS results High performance computing in a distributed/cloud environment, e.g. AWS Software development best practices, including agile, version control, unit and integration testing, documentation, and deployment. Strong understanding of the drug development process and fundamentals of mRNA technology Capable to draw robust conclusions from complex datasets, and present them in a clear and understandable way Capable of efficiently contributing to multiple concurrent and fast-paced projects Strong written and oral communication skills and a track record of achievement in publications and/or patent applications At Moderna, we believe that when you feel your best, you can do your best work. That's why our US benefits and global well-being resources are designed to support you-at work, at home, and everywhere in between. Best-in-class healthcare coverage, plus a suite of voluntary benefit programs to support your unique needs A holistic approach to well-being, with access to fitness, mindfulness, and mental health support Lifestyle Spending Accounts to personalize your well-being journey Family planning and adoption benefits Generous paid time off, including vacation, volunteer days, sabbatical, global recharge days, and a discretionary year-end shutdown Savings and investment opportunities Location-specific perks and extras About Moderna Since our founding in 2010, we have aspired to build the leading mRNA technology platform, the infrastructure to reimagine how medicines are created and delivered, and a world-class team. We believe in giving our people a platform to change medicine and an opportunity to change the world. By living our mission, values, and mindsets every day, our people are the driving force behind our scientific progress and our culture. Together, we are creating a culture of belonging and building an organization that cares deeply for our patients, our employees, the environment, and our communities. We are proud to have been recognized as a Science Magazine Top Biopharma Employer, a Fast Company Best Workplace for Innovators, and a Great Place to Work in the U.S. If you want to make a difference and join a team that is changing the future of medicine, we invite you to visit modernatx.com/careers to learn more about our current opportunities. Our Working Model As we build our company, we have always believed an in-person culture is critical to our success. Moderna champions the significant benefits of in-office collaboration by embracing a 70/30 work model. This 70% in-office structure helps to foster a culture rich in innovation, teamwork, and direct mentorship. Join us in shaping a world where every interaction is an opportunity to learn, contribute, and make a meaningful impact. Moderna is a smoke-free, alcohol-free, and drug-free work environment. Equal Opportunities Moderna is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry or citizenship, ethnicity, disability, military or protected veteran status, genetic information, sexual orientation, marital or familial status, or any other personal characteristic protected under applicable law. Moderna is a place where everyone can grow. If you meet the Basic Qualifications for the role and you would be excited to contribute to our mission every day, please apply! Moderna is an E-Verify Employer in the United States. We consider qualified applicants regardless of criminal histories, consistent with legal requirements. Accommodations We're focused on attracting, retaining, developing, and advancing our employees. By cultivating a workplace that values diverse experiences, backgrounds, and ideas, we create an environment where every employee can contribute their best. Moderna is committed to offering reasonable accommodations to qualified job applicants with disabilities. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should contact the Accommodations team at leavesandaccommodations@modernatx.com. Export Control Notice This position may involve access to technology or data that is subject to U.S. export control laws, including the Export Administration Regulations (EAR). As such, employment is contingent upon the applicant's ability to access export-controlled information in accordance with U.S. law. Due to the nature of the work and regulatory requirements, only individuals who qualify as U.S. persons (citizens, permanent residents, asylees, or refugees) are eligible for this position. For this role Moderna is unable to sponsor non-U.S. persons to apply for an export control license. #LI-CK1 -
    $70k-100k yearly est. Auto-Apply 60d+ ago
  • Bioinformatics Engineer II (18 Month Fixed-Term) (Hybrid Opportunity)

    Stanford University 4.5company rating

    Remote job

    **School of Medicine, Stanford, California, United States** Information Analytics Post Date Oct 14, 2025 Requisition # 107526 The Department of Medicine,Division of Cardiovascular Medicineat Stanford University is seeking a talented Bioinformatics Engineer II to join the Bioinformatics Core (BIC) of the Molecular Transducers of Physical Activity Consortium (MoTrPAC). As part of this groundbreaking national research consortium, you will help unravel the molecular mechanisms underlying the benefits of physical activity. Under the supervision of co-PIs Dr. Euan Ashley and Dr. Matthew Wheeler, you will play a crucial role in shaping the future of personalized exercise science and public health. Dr. Ashley's research focuses on applying genomics and other omics data to improve clinical care, with an emphasis on cardiovascular disease and personalized medicine. Dr. Wheeler's research centers on integrating large-scale molecular and clinical data to understand the genetic basis of diseases and to develop novel therapeutic strategies. In this role, you will focus on genome, epigenome, and transcriptome (GET) analyses (specifically WGS, ATAC-seq, and RNA-seq) running the pipelines and tools that convert raw sequencing data into clean, analysis-ready results for the consortium. You will architect and operate scalable workflows that adhere to best practices, including WGS variant calling and joint genotyping, RNA-seq quantification and differential expression, and ATAC-seq peak calling and differential accessibility. You will adapt rigorous QC frameworks across modalities; produce integrated multi-omics analyses (e.g., linking genetic variation, chromatin accessibility, and gene expression through eQTL/ca QTL/colocalization); and deliver clear visualizations, genome browser tracks, and interactive dashboards that enable collaborative interpretation across teams. Your work will span data engineering and software development: building reproducible pipelines with Nextflow and/or WDL/Cromwell, containerizing and testing them for reliable deployment on cloud and HPC environments; leveraging GCP services such as Cloud Storage and BigQuery; and designing robust schemas for omics metadata and results. You will apply software engineering best practices (version control, code review, automated testing, and documentation) while implementing data governance aligned with FAIR principles and secure handling of controlled-access human genomic data. As a key contributor to our public-facing portal (************************** you will help push the boundaries of biomedical data analytics to accelerate discovery and translation. You will collaborate closely with wet-lab scientists, clinicians, and data engineers to translate biological questions into robust computational analyses and to communicate findings in reports, presentations, and publications. Working within our multidisciplinary team, you will be at the forefront of understanding how physical activity preserves and improves health, ultimately making a lasting impact on human well-being. This is an 18-month fixed term position. This is a hybrid eligible position. **Why Join Us?** + Work on a highly exciting and innovative multi-omics project with the potential to revolutionize our understanding of physical activity and health. + Be part of a world-class research team at Stanford University, led by Dr. Euan Ashley, a pioneer in personalized medicine + Contribute to groundbreaking research with a significant impact on public health and the prevention of diseases. + Enjoy a collaborative and stimulating work environment at one of the top universities in the world. If you are a passionate and dedicated professional with the required qualifications and a strong interest in advancing scientific research, we encourage you to apply for this exciting opportunity. Join us in unraveling the mysteries of physical activity and making a lasting impact on human health. A complete application will include a cover letter. **Duties include:** + Prioritize and extract data from a variety of sources such as notes, survey results, medical reports, and laboratory data, and maintain its accuracy and completeness. + Determine additional data collection and reporting requirements. + Design and customize reports based upon data in the database. Oversee and monitor regulatory compliance for utilization of the data. + Use system reports and analyses to identify potentially problematic data, make corrections, and eliminate root cause for data problems or justify solutions to be implemented by others. + Create complex charts and databases, perform statistical analyses, and develop graphs and tables for publication and presentation. + Serve as a resource for non-routine inquiries such as requests for statistics or surveys. + Test prototype software and participate in approval and release process for new software. + Provide documentation based on audit and reporting criteria to investigators and research staff. **DESIRED QUALIFICATIONS:** + Transcriptomics and Gene Expression Analysis: Comprehensive RNA-seq workflows including read alignment (STAR, HISAT2), quantification (Salmon, Kallisto), QC (FastQC, MultiQC, RSeQC, Picard), normalization and differential expression (DESeq2, edgeR, limma), and pathway enrichment. Isoform analysis (StringTie) and fusion detection (STAR-Fusion) are a plus. + Advanced Genomics Data Analysis Expertise: Extensive experience with WGS data from raw FASTQ through variant calling, joint genotyping, annotation, cohort-level QC, and interpretation. Proficiency with BWA-MEM/BWA, GATK Best Practices (BQSR, HaplotypeCaller, joint calling, VQSR), DeepVariant, bcftools, and scalable VCF/BCF/CRAM handling. + Structural and Copy Number Variation: Experience with SV/CNV calling and QC (e.g., Manta, Delly, LUMPY, CNVnator), sample-level QC (coverage, duplication, contamination via VerifyBamID/Peddy/Somalier), and cohort metrics (Ti/Tv, call rate, Hardy-Weinberg). + Epigenomics and Chromatin Accessibility Analysis: Expertise in ATAC-seq processing and analysis, including alignment (BWA/Bowtie2), Tn5 shifting, peak calling (MACS2), replicate concordance (IDR), QC metrics (FRiP, TSS enrichment, nucleosome signal), differential accessibility (DiffBind/DESeq2), footprinting (HINT-ATAC), motif enrichment (HOMER/MEME), and browser tracks (big Wig/big Bed for IGV/UCSC). Regulatory element annotation using ENCODE/Roadmap resources. + Multi-omics Data Integration: Experience integrating WGS, ATAC-seq, and RNA-seq to identify regulatory relationships (eQTL/ase QTL/ca QTL, colocalization), linking chromatin accessibility to gene expression and variant effects. + Advanced Python and R for Genomics: Deep proficiency in Python and R/Bioconductor with strong statistical and reproducible analysis skills. + Genomics Workflow Development: Proven experience designing, testing, and deploying complex workflows using Nextflow and/or WDL/Cromwell (or Snakemake) in cloud or HPC environments, with containerization (Docker, Singularity) and CI/CD for reproducibility. + Specialized Cloud and Database Skills: Hands-on experience with GCP (Cloud Storage, BigQuery), and genomics platforms (Terra, AnVIL). SQL skills and experience designing schemas for omics metadata/results; familiarity with gnom AD, ClinVar, Ensembl/RefSeq, db SNP, UCSC. + Genome Browser and Visualization Expertise: Proficiency creating custom track hubs and sessions for IGV/UCSC; ability to produce publication-quality visualizations and interactive dashboards for large-scale genomics data. + Software Engineering Best Practices: Version control (Git/GitHub), code review, issue tracking, semantic versioning, packaging (setuptools/Poetry), automated testing (pytest), and comprehensive documentation (Sphinx/MkDocs). + Data Governance and FAIR Principles: Demonstrated experience with data lineage, provenance, audit trails, and adherence to FAIR; secure handling of controlled-access human genomic data (HIPAA/IRB compliance, DUAs), and submissions to db GaP/GEO/SRA. + Cross-functional Collaboration and Communication: Proven ability to work with wet-lab scientists, clinicians, and data engineers to translate biological questions into robust, actionable computational analyses. **EDUCATION & EXPERIENCE (REQUIRED):** + Bachelor's degree and three years of relevant experience or combination of education and relevant experience. Experience in a quantitative discipline such as economics, finance, statistics or engineering. **KNOWLEDGE, SKILLS AND ABILITIES (REQUIRED):** + Substantial experience with MS Office and analytical programs. + Excellent writing and analytical skills. + Ability to prioritize workload. **CERTIFICATIONS & LICENSES:** + None **PHYSICAL REQUIREMENTS*:** + Sitting in place at computer for long periods of time with extensive keyboarding/dexterity. + Occasionally use a telephone. + Rarely writing by hand. **WORKING CONDITIONS:** + Some work may be performed in a laboratory or field setting. **WORKING STANDARDS:** + Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations. + Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned. + Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University's Administrative Guide,******************************** **The expected pay range for this position is $108,002 to $128,138 per annum.** **Stanford University provides pay ranges representing its good faith estimate of what the university reasonably expects to pay for a position. The pay offered to a selected candidate will be determined based on factors such as (but not limited to) the scope and responsibilities of the position, the qualifications of the selected candidate, departmental budget availability, internal equity, geographic location and external market pay for comparable jobs.** **At Stanford University, base pay represents only one aspect of the comprehensive rewards package. The Cardinal at Work website (** ******************************************************** **) provides detailed information on Stanford's extensive range of benefits and rewards offered to employees. Specifics about the rewards package for this position may be discussed during the hiring process.** **Why Stanford is for You** Imagine a world without search engines or social platforms. Consider lives saved through first-ever organ transplants and research to cure illnesses. Stanford University has revolutionized the way we live and enrich the world. Supporting this mission is our diverse and dedicated 17,000 staff. We seek talent driven to impact the future of our legacy. Our culture andunique perksempower you with: + **Freedom to grow.** We offer career development programs, tuition reimbursement, or audit a course. Join a TedTalk, film screening, or listen to a renowned author or global leader speak. + **A caring culture.** We provide superb retirement plans, generous time-off, and family care resources. + **A healthier you.** Climb our rock wall or choose from hundreds of health or fitness classes at our world-class exercise facilities. We also provide excellent health care benefits. + **Discovery and fun.** Stroll through historic sculptures, trails, and museums. + **Enviable resources.** Enjoy free commuter programs, ridesharing incentives, discounts and more. _Consistent with its obligations under the law, the University will provide reasonable accommodations to applicants and employees with disabilities. Applicants requiring a reasonable accommodation for any part of the application or hiring process should contact Stanford University Human Resources by submitting a_ _contact form_ _._ _Stanford is an equal employment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law._ _The job duties listed are typical examples of work performed by positions in this job classification and are not designed to contain or be interpreted as a comprehensive inventory of all duties, tasks, and responsibilities. Specific duties and responsibilities may vary depending on department or program needs without changing the general nature and scope of the job or level of responsibility. Employees may also perform other duties as assigned._ Additional Information + **Schedule: Full-time** + **Job Code: 4752** + **Employee Status: Fixed-Term** + **Grade: I** + **Requisition ID: 107526** + **Work Arrangement : Hybrid Eligible**
    $108k-128.1k yearly 60d+ ago
  • Computer Scientist - AI Training (Freelance, Remote)

    Alignerr

    Remote job

    Alignerr.com is a community of subject matter experts from several disciplines who align AI models by creating high-quality data in their field of expertise to build the future of Generative AI. Alignerr is operated by Labelbox. Labelbox is the leading data-centric AI platform for building intelligent applications. Teams looking to capitalize on the latest advances in generative AI and LLMs use the Labelbox platform to inject these systems with the right degree of human supervision and automation. Whether they are building AI products by using LLMs that require human fine-tuning, or applying AI to reduce the time associated with manually-intensive tasks like data labeling or finding business insights, Labelbox enables teams to do so effectively and quickly. Current Labelbox customers are transforming industries within insurance, retail, manufacturing/robotics, healthcare, and beyond. Our platform is used by Fortune 500 enterprises including Walmart, Procter & Gamble, Genentech, and Adobe, as well as hundreds of leading AI teams. We are backed by leading investors including SoftBank, Andreessen Horowitz, B Capital, Gradient Ventures (Google's AI-focused fund), Databricks Ventures, Snowpoint Ventures and Kleiner Perkins. About the Role: You will work on a variety of projects that involve labeling data, writing code, and providing feedback to improve the performance of AI models. Your contributions will directly impact the development of cutting-edge AI technology. We are seeking talented individuals across three experience levels: Level 1 (Bachelor's Level): Strong understanding of fundamental programming concepts. Proficient in at least one programming language (e.g., Python, Java, C++). Familiarity with data structures and algorithms. Basic understanding of machine learning concepts is a plus. Level 2 (Master's Level): In addition to Level 1 requirements, experience with software development methodologies (e.g., Agile). Working knowledge of multiple programming languages. Experience with machine learning libraries and frameworks (e.g., TensorFlow, PyTorch, scikit-learn). Experience building and deploying machine learning models. Level 3 (PhD Level): Expertise in advanced machine learning techniques (e.g., deep learning, reinforcement learning, NLP). Strong research background in AI/ML, evidenced by publications or projects. Ability to design and implement novel algorithms and models. Excellent communication skills for explaining complex technical concepts. Your Day to Day: Data Labeling: Annotate and label datasets for various AI tasks such as natural language processing, computer vision, and more. Code Evaluation & Debugging: Analyze and assess code snippets generated by AI models, identifying errors and providing feedback for improvement. Model Training: Contribute to the training of AI models by providing high-quality labeled data and feedback on model performance. Collaboration: Work independently and as part of a team with other AI professionals, data scientists, and engineers. Alignerr strives to ensure pay parity across the organization and discuss compensation transparently. The expected hourly rate range for United States-based candidates is below. Exact compensation varies based on a variety of factors, including skills and competencies, experience, and geographical location. Pay Range (rate per hour)$15-$60 USDImportant Information This is a freelance position compensated on an hourly basis. Please note that this is not an internship opportunity. Candidates must be authorized to work in their country of residence, and we do not offer sponsorship for this 1099 contract role. International students on a valid visa may be eligible to apply; however, specific circumstances should be discussed with a tax or immigration advisor. We are unable to provide employment documentation at this time. Compensation rates may vary for non-US locations.
    $86k-123k yearly est. Auto-Apply 60d+ ago
  • Scientist II, Bioinformatics

    Pacific Biosciences 4.7company rating

    Remote job

    PacBio (NASDAQ: PACB) is a premier life science technology company that designs, develops, and manufactures advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. Our mission is to enable the promise of genomics to better human health. Genomics is core to all biological processes, and our advanced genomics tools provide scientists and clinical researchers the insights to better understand biology and health. We are now entering the century of biology and genomics is at the heart of the next revolution. Become part of the new paradigm in gene sequencing and help shape the future of genomic study by joining the PacBio team. We are seeking a computational scientist to develop and apply long-read sequencing methods in cancer research and human genomics. In this role, you will build software that enables streamlined analysis of PacBio HiFi data, including secondary analysis tools and production pipelines; run large-scale genomic workflows; and interpret results from diverse datasets. You will collaborate closely with internal teams and a broad range of external partners, contribute to our scientific mission, and help drive new insights through HiFi data. We are looking for someone who is thoughtful, motivated to tackle challenging problems, and adaptable enough to work on projects spanning product development and applied research. Responsibilities: Build reliable, well-tested bioinformatic software and end-to-end analysis pipelines Apply bioinformatic tools to answer biological questions related to human health, including cancer and rare disease Collaborate with external partners in both academia and industry, supporting and leading projects Benchmark and evaluate bioinformatic methods Communicate scientific findings through oral and written formats, including papers, posters, and talks at national and international scientific conferences Required Qualifications: Ph.D. in a computational or biological field (e.g., bioinformatics, genetics, genomics, computer science) Strong programming skills in Rust, Python, or C++ Proficiency in analyzing large-scale sequencing datasets (e.g., genomics, transcriptomics, epigenomics, genome assemblies) Foundational understanding of cancer genetics, human genomics, or RNA biology, with interest in developing deep expertise in these areas Basic statistical skills for analyzing large datasets, including visualization, modeling, and quality control Track record of scientific publishing, including first-author manuscripts Excellent interpersonal, written, and verbal communication skills Preferred Experience: Experience working within large scientific consortia and collaborating closely with both wet-lab and computational teams Demonstrated ability to develop and maintain analysis pipelines using WDL or Snakemake Experience building and deploying containerized software (e.g., Docker or Singularity) Familiarity with modern software development practices Candidates must have current authorization to work in the United States without the need for present or future sponsorship. Non-Field Based Employees are required to be onsite Monday-Thursday (Friday work from home). Depending on the role, some employees may be required to be 100% onsite. You may be required from time to time to visit and work at PacBio locations and for such times as the Company considers necessary for the proper performance of your duties. All listed tasks and responsibilities are deemed as essential functions to this position; however, business conditions may require reasonable accommodations for additional tasks and responsibilities. All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation. #LI-Onsite Salary Range: $128,800.00 - $193,200.00 To all Staffing and Recruiting Agencies: Our Careers Site is only for individuals seeking a job at PacBio. Staffing and recruiting agencies and individuals being represented by an agency are not authorized to use this site or to submit profiles, applications or resumes, and any such submissions will be considered unsolicited. PacBio does not accept unsolicited resumes or applications from agencies. Please do not forward resumes to our jobs alias, PacBio employees or any other company location. PacBio is not responsible for any fees related to unsolicited resumes/applications. All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation. If you are an individual with a disability and require a reasonable accommodation to complete any part of the application process, or are limited in the ability or unable to access or use this online application process and need an alternative method for applying, you may contact us at ************, or ****************************** for assistance. Visit our following pages for more information on: FAQs Benefits Culture Equal Opportunity Employment
    $128.8k-193.2k yearly Auto-Apply 7d ago
  • Remote Software Engineer - Bioinformatics

    Kforce 4.8company rating

    Remote job

    Kforce's client, a growing Biotechnology/Pharmaceutical technology company, is seeking a remote Software Engineer to work as part of the Research Software team in Functional Genomics. We are working directly with the Hiring Manager on this search assignment. This position is 100% remote. The company offers a competitive compensation package including base salary, annual bonus and Stock/RSU's. The Software Engineer will work as part of a multidisciplinary and highly innovative team designing and implementing tools to support their drug discovery research efforts. Work will include Docker-based web services delivering rich data-driven user-interfaces for the interrogation of complex biological and chemical data. Responsibilities: * Develop tools for various research teams that help medicinal chemists, biologists and computational biologists better capture and leverage in-house and external data in their research * Maintain legacy Java software and migrate legacy Java software into contemporary technologies (Java or Node/Typescript) * Create new backend services to accommodate our expanding infrastructure * Enhance institutional data access using tools like RESTful API's and modern web UI/UX frameworks * Work directly with end-users to troubleshoot and/or design and prioritize feature enhancements to existing tools* BS or MS degree in Computer Science, Computer Engineering, Biomedical, Biotechnology or related field preferred * At least 3+ years of software development experience * Proficient with Java, JavaScript or typescript would be ideal * Experience with Node.js, Git and Python are a plus * Knowledge of Java GUI frameworks like Swing, AWT is a plus * Knowledge of web frameworks like Jersey or Spring * Knowledge of Maven and Gradle * Experience with software test automation is a plus but not required * Experience with relational databases * Experience deploying services using AWS services and Docker is a plus * Linux skills are preferred * Must have excellent communication and requirement gathering skills * An ability to be productive and successful in an intense work?environment * Able to learn new technologies quickly and jump in anywhere in our stack * Experience with bioinformatics and genomics is a plus Nice to Have: * Experience with GraphQL * Experience with NoSQL databases * Experience with a web app component-based framework Kforce is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, pregnancy, sexual orientation, gender identity, national origin, age, protected veteran status, or disability status.
    $106k-148k yearly est. 52d ago
  • Consulting Associate/Computer Scientist (Forensic Services practice)

    Charles River Associates 4.7company rating

    Remote job

    Charles River Associates is a leading global consulting firm that provides economic, financial, and business management expertise to major law firms, corporations and governments around the world. CRA advises clients on economic and financial matters pertaining to litigation and regulatory proceedings, and guides corporations through critical business strategy and performance-related issues. Since 1965, clients have engaged CRA for its combination of industry experience and rigorous, fact-based analysis that provide clients with clear, implementable solutions to complex business concerns. Position Overview CRA's Forensic Services practice supports companies involved in litigation concerning computer technology by assisting them and their counsel in analyzing source code, software, and hardware to better understand the relevant technical issues and help resolve the dispute. We are noted for deploying cross-trained teams of forensic professionals to assist our clients in gaining deeper insights and greater value more quickly. We value knowledge of software development, system design and implementation, exceptional written and oral communication skills, a high level of initiative, and a willingness to proactively raise issues to keep projects running smoothly. We expect Consulting Associates to use their technical expertise to solve client problems, work collaboratively with a team, effectively manage their time, prioritize tasks, and take pride and ownership in their work. The opportunities to contribute to the Forensic Services team in this role may include (but are not limited to): Conduct detailed investigations of source code and systems in the context of alleged copyright infringement, patent infringement, trade secret misappropriation, software failure, and software audit matters; Leverage technical and consulting expertise to support counsel and clients in intellectual property litigation or disputes involving complex technology; Analyze and inspect source code, database schemas, system configurations, technical documentation, and other sources of technical evidence typically produced in the context of intellectual property litigation; Assist with the preparation of expert reports and declarations describing technical and analytical findings; Ensure reliability of analysis and risk management through implementing quality control measures and documentation; Participate in practice-building activities including recruiting and training. Desired Qualifications Bachelor's degree in Computer Science or other programming-focused discipline, advanced degree preferred; 2-5 years of related work experience; Experience and deep understanding of programming languages including C, Java, or Python; Strong understanding of source code analysis, binary reverse engineering, and/or hardware functional testing techniques; Familiarity with analytical tools ( e.g. , SciTools Understand) used to visualize and understand software code; Understanding of database administration and software development models (SDLC, Agile, etc.); Experience with drafting technical and investigative reports and communicating technical findings; No legal experience is necessary; we can teach you what you need to know in that area as long as you bring an open and curious mind. To Apply To be considered for this position, we require the following: Resume - please include current address, personal email and telephone number Career Growth and Benefits CRA's robust skills development programs, including a commitment to offering 100 hours of training annually through formal and informal programs, encourage you to thrive as an individual and team member. Beginning with research and analysis skill building, training continues with technical training, presentation skills, internal seminars, and career mentoring and performance coaching from an assigned senior colleague. Additional leadership and collaboration opportunities exist through internal firm development activities. We offer a comprehensive total rewards program including a superior benefits package, wellness programming to support physical, mental, emotional and financial well-being, and in-house immigration support for foreign nationals and international business travelers. Work Location Flexibility CRA creates a work environment that enables our colleagues to benefit from being together in the office to best deliver on our promise of career growth, mentorship and inclusivity. At the same time, we recognize that individuals realize a range of benefits when working from home periodically. We currently expect that individuals spend at least 3 to 4 days a week working in the office (which may include traveling to another CRA office or to client meetings), with specific days determined in coordination with your practice or team. Our Commitment to Equal Employment Opportunity Charles River Associates is an equal opportunity employer (EOE). All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, age, disability, status as a protected veteran, or any other protected characteristic under applicable law. Salary and other compensation A good-faith estimate of the annual base salary range for this position is $100,000 - $126,500. Stating pay within this range may vary based on factors such as education level, experience, skills, geographic location, market conditions, and other qualifications of the successful candidate. This position may be eligible for additional bonus incentive compensation. CRA offers a comprehensive benefits package, subject to eligibility requirements, which may include: medical, dental, and vision insurance; 401(k) retirement plan with employer match; life and disability insurance; paid time off (vacation, sick leave, holidays); paid parental leave; wellness programs and employee assistance resources; and commuter benefits.
    $100k-126.5k yearly Auto-Apply 2d ago
  • Bioinformatics Engineer - Software Development - PHP (Hybrid - Multiple Locations)

    Quest Diagnostics Incorporated 4.4company rating

    Remote job

    We are seeking a Full Stack Software Developer to join our Bioinformatics team, focused on advancing patient care through innovative software solutions. The successful candidate will design, implement, and maintain applications handling genetic data. Collaborating closely with the Data Science and Bioinformatics teams, the developer will work in an agile environment, contributing to the modernization of our systems while enhancing their own technical skills. This professional will work in a hybrid capacity involving at least 3 days a week onsite in one of the following office locations: Marlborough, MA Lewisville, TX Chantilly, VA Secaucus, NJ Schaumburg, IL Tampa, FL Responsibilities: Feature Development: * Design, implement, and maintain software application. * Ensure user requirements and performance standards are met. Cloud Deployment: * Deploy and manage applications for scalability and reliability. Agile Collaboration: * Participate in agile workflows, including sprint planning, daily stand-ups, and retrospectives. * Collaborate with cross-functional teams to ensure seamless integration and delivery. Quality Assurance: * Write unit, integration, and end-to-end tests to ensure code quality. * Conduct peer code reviews to uphold development standards. Qualifications: Required WorkExperience: * Bachelor's degree in Computer Science, Engineering, or a related field, or equivalent experience. * 1+ Years of Relevant Experience * Proficiency in modern software development practices and tools (e.g., CI/CD pipelines, version control, testing frameworks). * Experience with PHP, Laravel, MySQL * Familiarity with agile methodologies. * Test-driven development mindset and experience writing tests. * Excellent communication skills to engage with both technical and non-technical stakeholders Preferred Work Experience: * Knowledge of the health industry or interest in genetics and bioinformatics. * Experience implementing solutions in the cloud. AWS is preferred. * Experience with designing and working with application programming interfaces (e.g. JSON based RESTful APIs) Physical and Mental Requirements: * This role is required to collaborate with teams in US and EU, and at least 2 hour overlap during their business hours is expected Knowledge: * Proficiency in full stack development, including front-end, back-end, and databases. * Strong problem-solving abilities and a commitment to continuous learning. Skills: * Excellent collaboration and communication skills. * Adaptability to new tools and technologies 38066 Quest Diagnostics honors our service members and encourages veterans to apply. While we appreciate and value our staffing partners, we do not accept unsolicited resumes from agencies. Quest will not be responsible for paying agency fees for any individual as to whom an agency has sent an unsolicited resume. Equal Opportunity Employer: Race/Color/Sex/Sexual Orientation/Gender Identity/Religion/National Origin/Disability/Vets or any other legally protected status.
    $82k-105k yearly est. 60d+ ago

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